RNA id: TCONS_00024498


Basic Information

Item Value
RNA id TCONS_00024498
length 301
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id XLOC_011688
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45193180 ~ 45200541 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTGGTGACACAGTCGGCAGATTTTAACTGATATGCTACTTGTGTGAATTACATTCAAAAGGGCAGCCGCTCGTCTCCTCCGTGGGTGTGACTGGCACTGGTGAGGTGGTGGGACCCTTTAATGGTTTGTGGtgatttgtgtatatttttttttggaGTGCTGTGGTTGCTGTAGTGTGATTGCTGTGCTACTGGGAGTTAAGAGCTTCTCATCTGTTGCATCTTCTCACACTTCGTCCTGCCCCGTTGTAGGCCTGAGGTTTGCCctgaatgttttgttattttgtgttgCTTACTTTa

Function

GO:

id name namespace
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0010646 regulation of cell communication biological_process
GO:0010647 positive regulation of cell communication biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0023051 regulation of signaling biological_process
GO:0023056 positive regulation of signaling biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0050808 synapse organization biological_process
GO:0097060 synaptic membrane cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0045202 synapse cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023194 lncRNA upstream 12453 45177626 ~ 45180746 (+) False XLOC_011687
TCONS_00024759 lncRNA upstream 13771 45178799 ~ 45179428 (+) True XLOC_011687
TCONS_00023187 lncRNA upstream 271057 44899541 ~ 44922142 (+) True XLOC_011684
TCONS_00023185 lncRNA upstream 358776 44780359 ~ 44834423 (+) False XLOC_011684
TCONS_00024758 lncRNA upstream 429789 44761624 ~ 44763410 (+) True XLOC_011683
TCONS_00024762 lncRNA downstream 147492 45348023 ~ 45349995 (+) True XLOC_011691
TCONS_00023210 lncRNA downstream 376826 45577357 ~ 45580965 (+) False XLOC_011697
TCONS_00023211 lncRNA downstream 380096 45580627 ~ 45581628 (+) True XLOC_011697
TCONS_00023215 lncRNA downstream 438808 45639339 ~ 45640296 (+) False XLOC_011699
TCONS_00024499 lncRNA downstream 972148 46172679 ~ 46180237 (+) True XLOC_011704
TCONS_00023192 mRNA upstream 78680 45106526 ~ 45114519 (+) False XLOC_011686
TCONS_00023193 mRNA upstream 78680 45106706 ~ 45114519 (+) True XLOC_011686
TCONS_00023191 mRNA upstream 79393 45106424 ~ 45113806 (+) False XLOC_011686
TCONS_00023190 mRNA upstream 163174 45010230 ~ 45030025 (+) True XLOC_011685
TCONS_00023188 mRNA upstream 164272 45009868 ~ 45028927 (+) False XLOC_011685
TCONS_00023196 mRNA downstream 58728 45259259 ~ 45302962 (+) False XLOC_011689
TCONS_00023197 mRNA downstream 58739 45259270 ~ 45263464 (+) True XLOC_011689
TCONS_00023198 mRNA downstream 105114 45305645 ~ 45346635 (+) True XLOC_011690
TCONS_00023199 mRNA downstream 195315 45395846 ~ 45402961 (+) False XLOC_011692
TCONS_00023201 mRNA downstream 204227 45404758 ~ 45410653 (+) False XLOC_011693
TCONS_00023189 other upstream 181343 45010043 ~ 45011856 (+) False XLOC_011685
TCONS_00023179 other upstream 901679 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023173 other upstream 1251148 43941937 ~ 43942051 (+) True XLOC_011671
TCONS_00023158 other upstream 1318915 43863732 ~ 43874284 (+) False XLOC_011668
TCONS_00023133 other upstream 3433274 41759808 ~ 41759925 (+) True XLOC_011645
TCONS_00023200 other downstream 195563 45396094 ~ 45402959 (+) True XLOC_011692
TCONS_00023207 other downstream 272123 45472654 ~ 45475249 (+) False XLOC_011696
TCONS_00023216 other downstream 438811 45639342 ~ 45646531 (+) True XLOC_011699
TCONS_00023224 other downstream 547152 45747683 ~ 45748668 (+) False XLOC_011701
TCONS_00023226 other downstream 607622 45808153 ~ 45808248 (+) True XLOC_011702

Expression Profile

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