RNA id: TCONS_00023208


Basic Information

Item Value
RNA id TCONS_00023208
length 2805
RNA type mRNA
GC content 0.45
exon number 8
gene id XLOC_011696
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45472608 ~ 45518523 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACCTCAAAGAAGCGTTTGCGACAATCTTTGACCAAAATCGGAAAGTCGCACTATACGCCGCAGGCACAACGGTTGCTGTGCTGGGACTCggtcttgtttttaaatacatGCGTCGGGAGGAAAAGTTAACTCGAGTGGGAGTTGTAACTAAGCTGCTGGTTCATCCGCTGAAGTCTGGGAAAGCAGTGTCAGTGGAGGCAGCAGAATGCCTGCGAATGGGGCTGAAATACGGCGAACTGCGTGATCGTCACTGGCTGGTAATCACCGAGGATGGCCACATGGTGACAGGCCGACAGCAGCCGCGTCTTGTGTTGGTGTCTTTGACCTGTGAGGGTGGACATGTGAGCCTCAATGGACCGCAGATGGAGGAGCTGAAGTTTCCTCTTAACAAGGCCAGCGATTTGGTTGTGGACTGCAGaGTCTTCAGTGTAGATGTCCAGGGCAGGGACTGTGGCGACAAGGTCTCTGAATGGCTCACTCGATTTCTGGAAGCAGACAAACCTGTTCGCCTGGTGCATTATGAACCCGATCTGAAGCCCCAGAGGCCTCATGAGAAAGAGCCCCTATTTCCTAAAGATGATGAGGTGGCCTACCCCGATGCTGCTCCGGTCATGCTCATGACTGAGGCCTCTGTTGGAGACCTGAACAGCCGACTGGACAAGGATCTTTCTGTCTTTCAGTTTCGGCCCAGTATTGTTGTCAGTGACTGTGAAGCCTTCACTGAGGACACATGGGATCATATTCGTATTGGAGAAGTGGAGTTGAAAAGAGTCATAGGCTGTGGACGatGCCTTTTTACCACTGTTGACCCTGAGACTGGAGTCTTCTCTCGGAAAGAACCGCTTGACACTCTCAAAACCTATCGAATGACTGACCCCAAGCAGAAAACCTCACCAATACTGGGACAGTATTACACCGTCAGGAAAACGGGTGTTCTTCATGTCATCCCACCCATCACTTGCTGGAACTGTTTCTCTGCTATCAATGAGTAACATCTGGACCTCTTTTACTGACCACGATGCTCGCATTTCAGATGTCTTTTACTTGCTGTGGTATAGAAATAGTTTAGTCGTGTGAACCAACAGTACAGCAGTGGCTGCTGATGACTTTTCAAATATAGAGAGTTTGGTGTCTCGTGTTCCAAATCCAATGATGCTGGAAGTGATAAATATCTTGAACCTATCAGTGATCAGTAGTGTGTATCTGTTTTGGTTGTGGTGCAGCTCTCTGGAAACCTCACACAGACTTCACCCCACAAGATTAGGTACAGAACGCATTGAAAAAGCCTCTAAACACAAACTATACTGAACCGAAGGACACCATACCATTCAGAGTAAATGCGACTTAAAGGGCTCCTTTTTTACTTCTTTACTAGATATTAGACAAGTCTTTGGtgtcagaatgtgtctgtaaacagattttttaatcacagtttctttgcaaatcttgTATTGTGGACATGATTATAAACTTTACAATTGAGACCTGTTAAtacgtgcctgtcaatcaatttggtggccTGGGAAAACTGCACTGCTATGTGCTTTTGCGGTCAGCCTCAAATTTGCAGGGATtcagatcctattttaacgtcaggaaatatttaaaaagagattAATTGTGTGACTGTGAACCAATATGACCGTGAACTACGGTTGGGCGAAGTCGATcaatttggcatcatacgatATCTAACGTGAAACATctcgatggacgatggcatcgtcgtcatgtAAAAAAGTGGGGAGAGGGGGCAGTGGGTGTTTAACAGAGTGCGCACAACGTGCctaaagagcgaggagggatccggtggtgaggggtgagaagggtgcacaacttatttgaggaccaggagggagacgcgcaatttccgggagattatcactcatttgcgggcatctgggagtctctatgcatttgtgggagactcccagaacttccgggagacttgggatgtctgaatatcatgtttaacaactatagtgagatgtgaTCCAGCTGTACATTCATGATAAACTGTTctatgtgcactgctctctggagcttaGACGGAGGCATGtcagtgtgtgtggctgtgtgtgtgtgtagggtcacgtgatgtgcattttcagcggacggagggctgttcagaaatgctaggtgaaacacaGTGTTGATCATTTTCGTTCTGAAATGCCAGTTTAACACTAAGTCATATTAGTGTAAGCAGGGCCTAAGTATGTATTTTTCGTGAGAGGATCGGCGAtgtcggctcagcatcgtgttgtcgtGTTGTTTTGCATGATCGGAGTAGTTAGGAAAACAAAAAgcccaccccagtgacagctttgtACCTTTATTCTGAGAGTGAACTAATTTACTACAAAAGTTTCAAAACTGTTCTTACCTGTTTTGGGCATTTCCAAACCTGCCAAAGGGGTCTCCTGCTTTCCCGCCATCTCCAGTAAATATGTACAAATATCCGTCTAGACCAAACAGAATCTGCCCGCCATTATGGTTTGCTGCAGGCTCCTCAATCTCAAGAAGAACTCTAAGAAAGAATTAGGGAAGGTAATGATTAAAATTGACTGCTATTCCGAAATTATTGTTAATTAAGGATGGTtcatccaaaaactaaaatttaccCACTATTTACTCATCATAgaatgttttcaaacatttacCAAAGTCATAGTCAgatttattgtcaattcagccatatgtacaagacatatagagaatcaaaattgcgttactctcagacccaaggtgcctAACATTAATATAACAAAGTAgagttttaagaaaaagaaaatttacaa

Function

GO:

id name namespace
GO:0042126 nitrate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0043546 molybdopterin cofactor binding molecular_function
GO:0030151 molybdenum ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0008940 nitrate reductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-95 Predicted to enable molybdenum ion binding activity; molybdopterin cofactor binding activity; and nitrate reductase activity. Predicted to be involved in nitrate metabolic process. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Is expressed in otic placode and otic vesicle. Orthologous to human MTARC1 (mitochondrial amidoxime reducing component 1) and MTARC2 (mitochondrial amidoxime reducing component 2).

Ensembl:

ensembl_id ENSDART00000183474

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024762 lncRNA upstream 122700 45348023 ~ 45349995 (+) True XLOC_011691
TCONS_00023195 lncRNA upstream 272154 45199552 ~ 45200541 (+) False XLOC_011688
TCONS_00024761 lncRNA upstream 272154 45199871 ~ 45200541 (+) True XLOC_011688
TCONS_00024498 lncRNA upstream 272164 45193199 ~ 45200531 (+) False XLOC_011688
TCONS_00024760 lncRNA upstream 278759 45193180 ~ 45193936 (+) False XLOC_011688
TCONS_00023210 lncRNA downstream 58834 45577357 ~ 45580965 (+) False XLOC_011697
TCONS_00023211 lncRNA downstream 62104 45580627 ~ 45581628 (+) True XLOC_011697
TCONS_00023215 lncRNA downstream 120816 45639339 ~ 45640296 (+) False XLOC_011699
TCONS_00024499 lncRNA downstream 654156 46172679 ~ 46180237 (+) True XLOC_011704
TCONS_00024763 lncRNA downstream 937267 46455790 ~ 46464176 (+) True XLOC_011706
TCONS_00023205 mRNA upstream 13488 45454943 ~ 45459207 (+) True XLOC_011695
TCONS_00023204 mRNA upstream 20579 45413324 ~ 45452116 (+) True XLOC_011694
TCONS_00023203 mRNA upstream 61525 45405821 ~ 45411170 (+) False XLOC_011693
TCONS_00023202 mRNA upstream 61525 45405821 ~ 45411170 (+) True XLOC_011693
TCONS_00023201 mRNA upstream 62042 45404758 ~ 45410653 (+) False XLOC_011693
TCONS_00023209 mRNA downstream 58803 45577326 ~ 45599190 (+) False XLOC_011697
TCONS_00023212 mRNA downstream 84117 45602640 ~ 45621301 (+) False XLOC_011698
TCONS_00023213 mRNA downstream 89057 45607580 ~ 45620615 (+) True XLOC_011698
TCONS_00023214 mRNA downstream 120724 45639247 ~ 45647054 (+) False XLOC_011699
TCONS_00023217 mRNA downstream 130313 45648836 ~ 45678386 (+) False XLOC_011700
TCONS_00023200 other upstream 69736 45396094 ~ 45402959 (+) True XLOC_011692
TCONS_00023189 other upstream 460839 45010043 ~ 45011856 (+) False XLOC_011685
TCONS_00023179 other upstream 1181175 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023173 other upstream 1530644 43941937 ~ 43942051 (+) True XLOC_011671
TCONS_00023158 other upstream 1598411 43863732 ~ 43874284 (+) False XLOC_011668
TCONS_00023216 other downstream 120819 45639342 ~ 45646531 (+) True XLOC_011699
TCONS_00023224 other downstream 229160 45747683 ~ 45748668 (+) False XLOC_011701
TCONS_00023226 other downstream 289630 45808153 ~ 45808248 (+) True XLOC_011702
TCONS_00023227 other downstream 296830 45815353 ~ 45818477 (+) False XLOC_011703
TCONS_00023229 other downstream 396508 45915031 ~ 45955063 (+) False XLOC_011703

Expression Profile

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