RNA id: TCONS_00023212


Basic Information

Item Value
RNA id TCONS_00023212
length 2542
RNA type mRNA
GC content 0.45
exon number 14
gene id XLOC_011698
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45602640 ~ 45621301 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAATTCACTGATGTAACAGGCATGTTTCACTTAACAAgatacaaattcacaaataagtctagttcatcacacacacacatcagatttACAGCATGTGTACTAATGTGTACTTACGGCGGTGGAATATTTGTGTTAATTTACAGAACCTACTATTATGACGATTTGCCTTTAAGCACGTCACCACGTATGCGAGTTCTCATCCAAATGAGCTGACCAGTGCAGCGTCTGTCAGAGCGCTCGACCCTGCAGAGAGAGCAAAAAGGGTTCTGGGTGATAATAAAAATGCCTCCTCCAAACAATTGCCACCACAACCCAAATGAAGATGAAGTGGATTCCCTCACCAGTCCTTTGTACTTCTTGGATCAGAACTACCAGGAGCTTCAGCAGAAGTGTCTAACTGAAAGCACACTGTACAGCGATGAGCTGTTCCCTCCAGACAACAGCTCTATTGGCCTGTTTGATGAAGTGCCTCCAGAGGTGGACATGTCCCAGATTGTGTGGAAGCGGCCATCTGAGTTGGTGTCGGACCCTAACTTAATTGTGGATGATGTGTCCAGGTTTGACTATGCACAGGGGAGTGTATTAGGAAATTGTTGGTTCTTGGCTTCGATCGGGGCTCTAACTTTTGAGAAGGACATCATGAAACAAGTCCTGCCAGCTGAACAGTCATTCACCAAGGATTATGCTGGGATTTTTCATTTCAGGTTCTGGCGGTTTGAAAAATGGATTGATGTTGTTATTGATGACCAGCTTCCAACTATTGATGACGAACTGCTTTTTGTGTGTTCAAAAACGTCGAATGAGTTTTGGCCTGCCTTACTGGAGAAAGCTTATGCCAAGGTGTGTGGGTCCTATGCTGACTTGAACGCTGGCTTCATTTCTGAGGCCCTAATGGACTTCACTGGTGGGACGCATATGTATTACACACTGAGTTCAGCTCCTGCTGACTTGTGGAAAATCATGGAATGTGCATTTATATCAAAGACGCTTATTGGTTGCGGTTCCAATTCAGAGGGTTCACCTGAAGAAAATGAGTTACTGCATGGCATAATTGCAGACCATGCTTACACTGTGACCGGGGTATTTGAGGTAATAAGTGAGGAAAACCCAGTTCAGCTGGTGAGACTGTTAAATCCATGGGGTGAAGAAGAGTGGCAAGGAGACTGGAGTGATGAGTCACCTTTGTGGGAGACGGTTTGTGAGGAGGCCCGCAAATGTTGCCGTGAAGTTTTAAATGATGGGGAGTTCTGGATGTCGATGGAAGACTTCACCAGACTTTTTGAAAGCATAGATATCTGCTGTCTCTGTCCTGATTTTCTGGATGGTTCCTCTGATTGCCACTGGACCTCCAAACGCCATTTTGGCAGATGGAATGCAGAGAAATTCATGTATAATACTTTCATACACCACCTTACAGCTGGTGGTGACATCATTAAGACAGAGACCTTCTGGAAGAATCCTCAGTTTCGGGTGACAATTGACGAGCTGAATGAGGATTGTGCTAGTGGGCAGCGCCCTGAAAATATACTGGTGTCCCTGATGCAGAACCATGAGAAGAGAAACAGAAATAGCCAAGAAAATTATGACATTGGCTTTTATGTCTTTGAGATACCATTAGAGatgagacATCAGAATGAGAGGTTTGCGATGGAGTTTTTCGCTGACCGAGAGCCTGTGGCACACACTGATGATTTAGTTTGGTTGAGAGAGGTGATGAAATTCTTCAGACTGGAGCCAGGGGAGTACCTGATCGTGCCCTGCACAAAGAATCCTGGCGAGACTGCCTCCTTCGTCCTGTCTGTCTTCTCAAAGCATGAAACACACTTAGAGCAAATTCAAGAGACTACTGAGTAGAATGGAGAAGTTATTAGGAGAGGGTGCAGGGCAGAGCCAGCACTGGGCTGCGTTCCACTCCACTTTTAGAAACGAGTTCCCTCGGGGGAATCCCTAGCTCAATTTTGAAGTGCATCCTACTTCATCAAGTGAAAGAAGAAAGCTTACATGGACATACCCTTGATCCCTCGAATTTGACCAAGGGAGCAAGTCAGCTTTTGCATGTCCACTCCAGCACCTATATGTCCTAGAATGCAATGCGATTGTGACTTCACAACAGTGTAGTTCCTATATGCTcaagggtttagggaaggggtgtccaaactcggtcctggagggccgatgtcctgcataatttagttccaaccccagttaaacacacataaaccagctcatcaagctcttactagatataaacttccaggcaggtgtgttgaagcaagttggagctaaactatgcaggacaccggccctccaggaccgagtttggacatctctgCTGTAGGGATATCCATTTAAACCCATACAGATGTTCCACCAGTAGTGAACACTTGTGTGACGTAATCAATGATTATAGGTACATCAGAAGGAAGGACATGGAGTGATGGGTATAAAACAATGGACTAGAATGCAGCCCCagcccttaaagggtcacgaaacaccaaaacacatttttttgagctgttgacagtcatatatgtgtccca

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-116 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in eosinophilic esophagitis. Orthologous to several human genes including CAPN14 (calpain 14).

Ensembl:

ensembl_id ENSDART00000153822

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023211 lncRNA upstream 21012 45580627 ~ 45581628 (+) True XLOC_011697
TCONS_00023210 lncRNA upstream 21675 45577357 ~ 45580965 (+) False XLOC_011697
TCONS_00024762 lncRNA upstream 252645 45348023 ~ 45349995 (+) True XLOC_011691
TCONS_00023195 lncRNA upstream 402099 45199552 ~ 45200541 (+) False XLOC_011688
TCONS_00024761 lncRNA upstream 402099 45199871 ~ 45200541 (+) True XLOC_011688
TCONS_00023215 lncRNA downstream 18038 45639339 ~ 45640296 (+) False XLOC_011699
TCONS_00024499 lncRNA downstream 551378 46172679 ~ 46180237 (+) True XLOC_011704
TCONS_00024763 lncRNA downstream 834489 46455790 ~ 46464176 (+) True XLOC_011706
TCONS_00024764 lncRNA downstream 1121995 46743296 ~ 46825416 (+) True XLOC_011708
TCONS_00023236 lncRNA downstream 1229725 46851026 ~ 46854102 (+) True XLOC_011711
TCONS_00023209 mRNA upstream 3450 45577326 ~ 45599190 (+) False XLOC_011697
TCONS_00023208 mRNA upstream 84117 45472695 ~ 45518523 (+) True XLOC_011696
TCONS_00023206 mRNA upstream 119898 45472608 ~ 45482742 (+) False XLOC_011696
TCONS_00023205 mRNA upstream 143433 45454943 ~ 45459207 (+) True XLOC_011695
TCONS_00023204 mRNA upstream 150524 45413324 ~ 45452116 (+) True XLOC_011694
TCONS_00023214 mRNA downstream 17946 45639247 ~ 45647054 (+) False XLOC_011699
TCONS_00023217 mRNA downstream 27535 45648836 ~ 45678386 (+) False XLOC_011700
TCONS_00023218 mRNA downstream 33423 45654724 ~ 45677916 (+) True XLOC_011700
TCONS_00023219 mRNA downstream 116691 45737992 ~ 45774592 (+) False XLOC_011701
TCONS_00023220 mRNA downstream 116794 45738095 ~ 45751405 (+) False XLOC_011701
TCONS_00023207 other upstream 127391 45472654 ~ 45475249 (+) False XLOC_011696
TCONS_00023200 other upstream 199681 45396094 ~ 45402959 (+) True XLOC_011692
TCONS_00023189 other upstream 590784 45010043 ~ 45011856 (+) False XLOC_011685
TCONS_00023179 other upstream 1311120 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023173 other upstream 1660589 43941937 ~ 43942051 (+) True XLOC_011671
TCONS_00023216 other downstream 18041 45639342 ~ 45646531 (+) True XLOC_011699
TCONS_00023224 other downstream 126382 45747683 ~ 45748668 (+) False XLOC_011701
TCONS_00023226 other downstream 186852 45808153 ~ 45808248 (+) True XLOC_011702
TCONS_00023227 other downstream 194052 45815353 ~ 45818477 (+) False XLOC_011703
TCONS_00023229 other downstream 293730 45915031 ~ 45955063 (+) False XLOC_011703

Expression Profile

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