RNA id: TCONS_00023214


Basic Information

Item Value
RNA id TCONS_00023214
length 1326
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_011699
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45639247 ~ 45647054 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGAAAGGACGAGTTTAATCGAGTTGTACTACAGGTGGCAGTAATGCACGAGTATAGATTCCCACTGCTGGTAAACATCAAAGAAGAGAAAGAAGAAACATGGCGGCTGACGAGGACTCGGAGGATTATTTTGTCAGAGAAATAGAGAAAAATGACGGGTCTGTTTTGAGAATGTATCAGTGCAGTAAAGGAGACGTGGGTTGTGTCGTGTGGGATGCTGCTATTGTCCTGTCAAAATACCTCGAAACGGAACAGTTTTGCAGTATTGGGTCCGGTGTGAGTATGTGGTCCTCAAAGAACATTATTGAACTGGGTGCAGGAACAGGACTCGTGGGTCTCGTGGCTGCATCTCTAGGGGCAAATGTCACATTGACAGATCTGGAAGACCTGCAGCCTCTCCTTCAGCTGAACATTAAGAAGAACCAGCAACTCATCCACACAGGCTCAGTCACAGCCAAGGTACTGAAATGGGGGGCAAATGTTGATGATTTTCTACCTCATCCTCATTACATTCTGATGGCTGACTGTATCTACTACGAGCAGTCTGTGGAGCCACTAGTGGAGACTCTGAAACTCTTGGCTGGACCAGAGACGTGTATCATCTGCTGCTACGAGCAACGCACTGTTGGTGTCAATCCTGAGATAGAGAAGAGGTTCTTTGAGCTGCTACTGCAAGACTTCCAGTCAGAGGAGATCTCGTCTGAGAAACAAGACCCCGAGTTCAACAGTCCCGACATTCACATTCTCCACCTGCGGCGAAGAGTCAGCTGAACGACTTTTGTGCTCCAGTGTTTGAAATAGCGTGAAGGGGttgtgtgtttttgcattttaGTGGACGCCGTTATTATTATTCTGTTAAACTGCCTATGCTGGCTAATGACTATTTAATGTAATGATTTTCTTTATAATGGAAATTATAAAGGCCATATAAAGatttccttaaagggatagttcacccaaaattggaAAATCTGTCGTTATTTACTCTccattcacttgttcaaaacctgtttaagctcctttcttctgttgaacacaaaagaagacgttttaaagaatgctgaaaacctgtaaccattggcttccatggCTTGTGTTTCTcttacaattgaagtcaatggttacaggtcttcagctttcttcaaaatatcttcttttgagttcagaAAATTATaaacaagcatttttttatagagtatttttttaaataagctatgCCTTTAACAAGTCTTTTCAAGCTCAAAGTTCTGTTAAATTGTTCGTTAAACAGTCAAATATACagctctttgtgtgtttgtgatcagtaaataaaactaaatctaaaa

Function

GO:

id name namespace
GO:0018022 peptidyl-lysine methylation biological_process
GO:0018023 peptidyl-lysine trimethylation biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016279 protein-lysine N-methyltransferase activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-060825-19 Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in peptidyl-lysine trimethylation. Predicted to act upstream of or within methylation. Predicted to be active in cytosol. Orthologous to human VCPKMT (valosin containing protein lysine methyltransferase).

Ensembl:

ensembl_id ENSDART00000153669

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023211 lncRNA upstream 57619 45580627 ~ 45581628 (+) True XLOC_011697
TCONS_00023210 lncRNA upstream 58282 45577357 ~ 45580965 (+) False XLOC_011697
TCONS_00024762 lncRNA upstream 289252 45348023 ~ 45349995 (+) True XLOC_011691
TCONS_00023195 lncRNA upstream 438706 45199552 ~ 45200541 (+) False XLOC_011688
TCONS_00024499 lncRNA downstream 525625 46172679 ~ 46180237 (+) True XLOC_011704
TCONS_00024763 lncRNA downstream 808736 46455790 ~ 46464176 (+) True XLOC_011706
TCONS_00024764 lncRNA downstream 1096242 46743296 ~ 46825416 (+) True XLOC_011708
TCONS_00023236 lncRNA downstream 1203972 46851026 ~ 46854102 (+) True XLOC_011711
TCONS_00023238 lncRNA downstream 1264836 46911890 ~ 46920595 (+) True XLOC_011713
TCONS_00023212 mRNA upstream 17946 45602640 ~ 45621301 (+) False XLOC_011698
TCONS_00023213 mRNA upstream 18632 45607580 ~ 45620615 (+) True XLOC_011698
TCONS_00023209 mRNA upstream 40057 45577326 ~ 45599190 (+) False XLOC_011697
TCONS_00023208 mRNA upstream 120724 45472695 ~ 45518523 (+) True XLOC_011696
TCONS_00023206 mRNA upstream 156505 45472608 ~ 45482742 (+) False XLOC_011696
TCONS_00023217 mRNA downstream 1782 45648836 ~ 45678386 (+) False XLOC_011700
TCONS_00023218 mRNA downstream 7670 45654724 ~ 45677916 (+) True XLOC_011700
TCONS_00023219 mRNA downstream 90938 45737992 ~ 45774592 (+) False XLOC_011701
TCONS_00023220 mRNA downstream 91041 45738095 ~ 45751405 (+) False XLOC_011701
TCONS_00023223 mRNA downstream 91044 45738098 ~ 45775010 (+) False XLOC_011701
TCONS_00023207 other upstream 163998 45472654 ~ 45475249 (+) False XLOC_011696
TCONS_00023200 other upstream 236288 45396094 ~ 45402959 (+) True XLOC_011692
TCONS_00023189 other upstream 627391 45010043 ~ 45011856 (+) False XLOC_011685
TCONS_00023179 other upstream 1347727 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023173 other upstream 1697196 43941937 ~ 43942051 (+) True XLOC_011671
TCONS_00023224 other downstream 100629 45747683 ~ 45748668 (+) False XLOC_011701
TCONS_00023226 other downstream 161099 45808153 ~ 45808248 (+) True XLOC_011702
TCONS_00023227 other downstream 168299 45815353 ~ 45818477 (+) False XLOC_011703
TCONS_00023229 other downstream 267977 45915031 ~ 45955063 (+) False XLOC_011703
TCONS_00023230 other downstream 268057 45915111 ~ 45922900 (+) True XLOC_011703

Expression Profile

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