RNA id: TCONS_00023217


Basic Information

Item Value
RNA id TCONS_00023217
length 2417
RNA type mRNA
GC content 0.44
exon number 14
gene id XLOC_011700
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45648836 ~ 45678386 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGAGGTGGCACTGTTCCCCCTTGAAATATTGTCAAATTGACTACAGTGCCATTGGATTAGATCGTTGTCAATACTTTATTTGCGAAGTGAACCCACAGTTCCGAGTTTTTCTTGCAGCAGGAGAGACGCCACGACTTTGCGCTGTTTATGGTGGGAGGAATTTGGAAGACACCCCCCAGTTTGAGCAGTGGATACCTGTGCAGTGACGTGTTATGCAAAACAAAAGCATTCAAACATAACACCACACACTTCCTGAAAACCTCATTCAGCCCGAACAGGAATTCCAGAGCCTAGGGCAGAACAAAGAGAAAAGTCAAAGCCAGAAAGACAATCTGTTCATTTAGGCGAGCTGCTCTCCTTGAAGTTTTGATGCCAGAAAAATGCCTCCTCCTCAGGTGAACAAACCCATGTCTGAAATGACCATGAAAGAAAAAGCAGGCACTCTTGACGTGCCTCTGAATTTCTTGGGTCAAGACTACCAGGAGTTGCTGAAGAGCTGCATCACCAACAGGATGAGATTTGTCGATGATAGATTTCCTCCAGACAGCAGCTCCATTGACCCAAATAACAAACTCGGACTGGATATGTCCCAAATCCAGTGGCTGAGGCCATCAAAAATAGTGGCAGACCCTCAGTTCATTGTAAAGGGGGTTTCCAGATTTGACTATTCCCAAGGATCTTTTTTAGGAAACTGCTGGTTTCTTGCTTCGGTTGGGACTTTAACCTTTCAGAAAGATGTCTTGTATCAAGTAATGCCAGAAGGCCAGTCCTTTGGTAAAGATTATGCAGGGATATTTCACTTCAGATTTTGGCGGTTTGGGAAATGGATTGATGTTGTCATTGATGACAAACTGCCGACTATTAAGGGTGACTTGATTTTTGTTCATTCAAAAACATCAAATGAGTTCTGGCCTGCCTTACTGGAGAAAGCCTATGCCAAGGTGTGCGGCTCCTATTCTGACATGGACGCCGGTGTTGTATCTGAGGCTCTGCTGGACTTCACCGGTGGCATCCATGTGCGTTTCGAACTGGAAAAACCTCCCCTTGATTTGTGGAGCTTGATGGACCGAGCTGCCAAATGCAAGGCTCTAATGGCTTGTGGCACATACCCGGGGAAAACATCTGCAAATACAGAATTACCTAATGGCATTGTTCAAGGGCATGCATATTCAGTGACGGGGATTTTCAAGGTAACATGGCAAGGAGCACCAGTAAGGCTGGTGAGAGTGTTGAACCCATGGGGAAAACGCGAGTGGACTGGTGCCTGGTGTGACAAATCCTCAATGTGGAACAAAGTGAGTGAGAGTGAGCGAACCAAGTGTTGGTCTTTGGCCAATGATGGTGAATTCTGGATGTCAATGGAGGATTTCTCCAAAAACTTCGAAGAAGTTGATATTTGCTGCTTCACTCCCGACTTTCTGGACAATTCCTCTAAATGCAGCTGGAAAACTGTGCGCTACAATGGCAGCTGGGAAGCTGGAAAAACAGCTGGCGGCTGCCTCAATCACAAAGAGTCTTTCTGGACAAACCCTCAGTTTCGAGTGACGATTGAGAAGCTTGATGAGGAATGTTCTAGTTCCCAGTGCCCCGAAAATGTACTGGTGTCCCTCTTGCAGATCCATGAAGACCGATACAGAAGTCGTGTTAAAAACTGCTCCATCGGCTTCTGTGTTTTTGCGATACCACCAGAGATGCTATTCTTTCTCCTACAGATGAAAGATGAGAGGTTTCCAGCAAGCTTCTTCTCTCGTAGACGTACTGTGGCAGAAAGTGAAGCCTTCGTCAACGCGAGACATGTGATGAAATTCTTCAAGCTGGAGCCGGGAGAGTATCTCATCGTGCCGACCACTTTCAAACCAAACGAGTGCGCAAAATTCATGCTGTCCATCTTCTCAAAGAGTGAATCCCACAGGAAAAGCAGGAAACCTGAGATGACGTATGTGTGAGATGATTATATCAATGGTGAAACAGCGGAAAGTCTAATGAAAAGACTGACCGTATTGTTAGTCTATACTGTGGACgtttccttttatttttatgattatttttattcaaagttCCCGTGaagtaatttgaaaaaaaatttttgggatgtttgacaatctcaactgaaacttaatgagagggcgggacatagagtagctcctcctctttaaaaGCAAACAGCCAATAGTAAGAGCTCATGAGCATCAAATCAAAAGCGAATGAGAACGGCAGGGCATttcagatactagaaagcatttgattggtcaagatttgatgagaaactgaagtatgatgtGATGTGAAAAAGAAAACTGTGGATTATTTTAGATGGAAGTGATGTTTatgtcagttttatatcttctaaatgtgaatttagacactgttttggagcacttgagattatagatatccttaaaacttaCAAAATCTT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-83 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000155037

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023215 lncRNA upstream 8540 45639339 ~ 45640296 (+) False XLOC_011699
TCONS_00023211 lncRNA upstream 67208 45580627 ~ 45581628 (+) True XLOC_011697
TCONS_00023210 lncRNA upstream 67871 45577357 ~ 45580965 (+) False XLOC_011697
TCONS_00024762 lncRNA upstream 298841 45348023 ~ 45349995 (+) True XLOC_011691
TCONS_00023195 lncRNA upstream 448295 45199552 ~ 45200541 (+) False XLOC_011688
TCONS_00024499 lncRNA downstream 494293 46172679 ~ 46180237 (+) True XLOC_011704
TCONS_00024763 lncRNA downstream 777404 46455790 ~ 46464176 (+) True XLOC_011706
TCONS_00024764 lncRNA downstream 1064910 46743296 ~ 46825416 (+) True XLOC_011708
TCONS_00023236 lncRNA downstream 1172640 46851026 ~ 46854102 (+) True XLOC_011711
TCONS_00023238 lncRNA downstream 1233504 46911890 ~ 46920595 (+) True XLOC_011713
TCONS_00023214 mRNA upstream 1782 45639247 ~ 45647054 (+) False XLOC_011699
TCONS_00023212 mRNA upstream 27535 45602640 ~ 45621301 (+) False XLOC_011698
TCONS_00023213 mRNA upstream 28221 45607580 ~ 45620615 (+) True XLOC_011698
TCONS_00023209 mRNA upstream 49646 45577326 ~ 45599190 (+) False XLOC_011697
TCONS_00023208 mRNA upstream 130313 45472695 ~ 45518523 (+) True XLOC_011696
TCONS_00023219 mRNA downstream 59606 45737992 ~ 45774592 (+) False XLOC_011701
TCONS_00023220 mRNA downstream 59709 45738095 ~ 45751405 (+) False XLOC_011701
TCONS_00023223 mRNA downstream 59712 45738098 ~ 45775010 (+) False XLOC_011701
TCONS_00023222 mRNA downstream 59712 45738098 ~ 45775010 (+) False XLOC_011701
TCONS_00023221 mRNA downstream 59712 45738098 ~ 45775010 (+) False XLOC_011701
TCONS_00023216 other upstream 2305 45639342 ~ 45646531 (+) True XLOC_011699
TCONS_00023207 other upstream 173587 45472654 ~ 45475249 (+) False XLOC_011696
TCONS_00023200 other upstream 245877 45396094 ~ 45402959 (+) True XLOC_011692
TCONS_00023189 other upstream 636980 45010043 ~ 45011856 (+) False XLOC_011685
TCONS_00023179 other upstream 1357316 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023224 other downstream 69297 45747683 ~ 45748668 (+) False XLOC_011701
TCONS_00023226 other downstream 129767 45808153 ~ 45808248 (+) True XLOC_011702
TCONS_00023227 other downstream 136967 45815353 ~ 45818477 (+) False XLOC_011703
TCONS_00023229 other downstream 236645 45915031 ~ 45955063 (+) False XLOC_011703
TCONS_00023230 other downstream 236725 45915111 ~ 45922900 (+) True XLOC_011703

Expression Profile

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