RNA id: TCONS_00023224


Basic Information

Item Value
RNA id TCONS_00023224
length 331
RNA type processed_transcript
GC content 0.39
exon number 3
gene id XLOC_011701
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45737992 ~ 45775010 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaaaaatgttggaagcctgtaaccatAGTCTTCCATTTATAAGATGAAAACCATTGGTTCCAgattttctaacatttttcaaaatatcttcttttgcgttcaacagaaaaacGAAACTCTTGaaagcacttgaggATTGTCCAAACAGAATAAGAGGATTGTATACACAGTTTTAGAGTACTCACCTCTCCTTGACTCCTGCAATATGACCACAGATGACTGGGCCACTATTGGAAAAGACATTGAGAAACACTATGAGCAATATGATGGTTTCGTCATCCTGCACGGTACAGACACTATGGCTTACACCGCATCTGCCTTATCCTTCATG

Function

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0005575 cellular_component cellular_component
GO:0004067 asparaginase activity molecular_function

KEGG:

id description
ko00511 Other glycan degradation
ko04142 Lysosome

ZFIN:

id description
ZDB-GENE-070820-14 Predicted to enable asparaginase activity. Predicted to act upstream of or within cellular amino acid metabolic process. Orthologous to human ASPG (asparaginase).

Ensembl:

ensembl_id ENSDART00000136277

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023215 lncRNA upstream 107387 45639339 ~ 45640296 (+) False XLOC_011699
TCONS_00023211 lncRNA upstream 166055 45580627 ~ 45581628 (+) True XLOC_011697
TCONS_00023210 lncRNA upstream 166718 45577357 ~ 45580965 (+) False XLOC_011697
TCONS_00024762 lncRNA upstream 397688 45348023 ~ 45349995 (+) True XLOC_011691
TCONS_00023195 lncRNA upstream 547142 45199552 ~ 45200541 (+) False XLOC_011688
TCONS_00024499 lncRNA downstream 424011 46172679 ~ 46180237 (+) True XLOC_011704
TCONS_00024763 lncRNA downstream 707122 46455790 ~ 46464176 (+) True XLOC_011706
TCONS_00024764 lncRNA downstream 994628 46743296 ~ 46825416 (+) True XLOC_011708
TCONS_00023236 lncRNA downstream 1102358 46851026 ~ 46854102 (+) True XLOC_011711
TCONS_00023238 lncRNA downstream 1163222 46911890 ~ 46920595 (+) True XLOC_011713
TCONS_00023217 mRNA upstream 69297 45648836 ~ 45678386 (+) False XLOC_011700
TCONS_00023218 mRNA upstream 69767 45654724 ~ 45677916 (+) True XLOC_011700
TCONS_00023214 mRNA upstream 100629 45639247 ~ 45647054 (+) False XLOC_011699
TCONS_00023212 mRNA upstream 126382 45602640 ~ 45621301 (+) False XLOC_011698
TCONS_00023213 mRNA upstream 127068 45607580 ~ 45620615 (+) True XLOC_011698
TCONS_00023225 mRNA downstream 16496 45765164 ~ 45774598 (+) True XLOC_011701
TCONS_00023228 mRNA downstream 68859 45817527 ~ 45989466 (+) False XLOC_011703
TCONS_00023231 mRNA downstream 638418 46387086 ~ 46439252 (+) False XLOC_011705
TCONS_00023233 mRNA downstream 991025 46739693 ~ 46740881 (+) True XLOC_011707
TCONS_00023234 mRNA downstream 1069853 46818521 ~ 46820429 (+) True XLOC_011709
TCONS_00023216 other upstream 101152 45639342 ~ 45646531 (+) True XLOC_011699
TCONS_00023207 other upstream 272434 45472654 ~ 45475249 (+) False XLOC_011696
TCONS_00023200 other upstream 344724 45396094 ~ 45402959 (+) True XLOC_011692
TCONS_00023189 other upstream 735827 45010043 ~ 45011856 (+) False XLOC_011685
TCONS_00023179 other upstream 1456163 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023226 other downstream 59485 45808153 ~ 45808248 (+) True XLOC_011702
TCONS_00023227 other downstream 66685 45815353 ~ 45818477 (+) False XLOC_011703
TCONS_00023229 other downstream 166363 45915031 ~ 45955063 (+) False XLOC_011703
TCONS_00023230 other downstream 166443 45915111 ~ 45922900 (+) True XLOC_011703
TCONS_00023232 other downstream 638549 46387217 ~ 46436233 (+) True XLOC_011705

Expression Profile

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