RNA id: TCONS_00023230


Basic Information

Item Value
RNA id TCONS_00023230
length 777
RNA type processed_transcript
GC content 0.48
exon number 2
gene id XLOC_011703
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45815353 ~ 45989466 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCAGAGGATTACAGCTAGAAAGAGATCCAGAAACACAGAGGAAGgccagagagatggagagatagGAAAAGTACACAGAGGAGAAAGAAACAGGCAAATGATCCATGTGGATAGCTGCTTTTTGAGTGACAGCACTAATCCCTGACAAGGACAAATTGGGAAAACAGATTAATGCTGAGTGGTCGGGTCTCTGGAGCGGAGCCGGAGCCGGGGCTCTGCTGCACAGCTGCGTGTCAGTAGTCGGGAAACTGGTGCACTTCAGCCAAGGCTGATAGTGGGAAACACACCAATGTGCAGTAGGCAGTGAGGCGAATCCACACTTATAGCTACTCATGGTGGGCAGACTCGGACTAATGCCTCTAGTCAGAGCTCCCAGCTGGAGGGAGAGAAAAACATGGACTGTGGAGGAAAGTAAGTGGAGCGGCACTATGAAACTGAAACCGCAGATGTGGCTGAGGTTGACAATTCCCATGAGGTCATCAAGCCTGAATATCCTCTGTTGTGGCTGGAGGGAACAAAAGCAGCGGCTCACAATCCCATCACGATCCAGCCGGTTAAGCTTTGagcctgtaaaaaaaaatctgaaaacagcGTTATGTCTAATTAGTGTTCAACCTTCCCCTGATTTCCCAGCCCAATACCACCCAAGTGCACAGTTCATACTTATTCATGTTGCATGTTTTACCGCAACTCAAGCAAAATGCCAGACTACTTAATGAGATCCCTGTTGCTTGTCATTACAAACACACTCTACTGATTATACACATGCTACTGC

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100716-6 Predicted to enable microtubule binding activity and microtubule motor activity. Predicted to act upstream of or within microtubule-based movement. Predicted to be part of kinesin complex. Predicted to be active in microtubule. Is expressed in germ ring; lateral mesoderm; notochord; somite; and tail bud. Orthologous to human KIF26A (kinesin family member 26A).

Ensembl:

ensembl_id ENSDART00000157326

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023215 lncRNA upstream 274815 45639339 ~ 45640296 (+) False XLOC_011699
TCONS_00023211 lncRNA upstream 333483 45580627 ~ 45581628 (+) True XLOC_011697
TCONS_00023210 lncRNA upstream 334146 45577357 ~ 45580965 (+) False XLOC_011697
TCONS_00024762 lncRNA upstream 565116 45348023 ~ 45349995 (+) True XLOC_011691
TCONS_00024761 lncRNA upstream 714570 45199871 ~ 45200541 (+) True XLOC_011688
TCONS_00024499 lncRNA downstream 249779 46172679 ~ 46180237 (+) True XLOC_011704
TCONS_00024763 lncRNA downstream 532890 46455790 ~ 46464176 (+) True XLOC_011706
TCONS_00024764 lncRNA downstream 820396 46743296 ~ 46825416 (+) True XLOC_011708
TCONS_00023236 lncRNA downstream 928126 46851026 ~ 46854102 (+) True XLOC_011711
TCONS_00023238 lncRNA downstream 988990 46911890 ~ 46920595 (+) True XLOC_011713
TCONS_00023223 mRNA upstream 140101 45738098 ~ 45775010 (+) False XLOC_011701
TCONS_00023222 mRNA upstream 140101 45738098 ~ 45775010 (+) False XLOC_011701
TCONS_00023221 mRNA upstream 140101 45738098 ~ 45775010 (+) False XLOC_011701
TCONS_00023225 mRNA upstream 140513 45765164 ~ 45774598 (+) True XLOC_011701
TCONS_00023219 mRNA upstream 140519 45737992 ~ 45774592 (+) False XLOC_011701
TCONS_00023231 mRNA downstream 464186 46387086 ~ 46439252 (+) False XLOC_011705
TCONS_00023233 mRNA downstream 816793 46739693 ~ 46740881 (+) True XLOC_011707
TCONS_00023234 mRNA downstream 895621 46818521 ~ 46820429 (+) True XLOC_011709
TCONS_00023237 mRNA downstream 941216 46864116 ~ 46866095 (+) True XLOC_011712
TCONS_00023239 mRNA downstream 1012161 46935061 ~ 46936696 (+) True XLOC_011714
TCONS_00023227 other upstream 96634 45815353 ~ 45818477 (+) False XLOC_011703
TCONS_00023226 other upstream 106863 45808153 ~ 45808248 (+) True XLOC_011702
TCONS_00023224 other upstream 166443 45747683 ~ 45748668 (+) False XLOC_011701
TCONS_00023216 other upstream 268580 45639342 ~ 45646531 (+) True XLOC_011699
TCONS_00023207 other upstream 439862 45472654 ~ 45475249 (+) False XLOC_011696
TCONS_00023232 other downstream 464317 46387217 ~ 46436233 (+) True XLOC_011705
TCONS_00023235 other downstream 926349 46849249 ~ 46849346 (+) True XLOC_011710
TCONS_00023244 other downstream 1274976 47197876 ~ 47197992 (+) True XLOC_011717
TCONS_00023246 other downstream 1468617 47391517 ~ 47391634 (+) True XLOC_011719
TCONS_00023279 other downstream 3587966 49510866 ~ 49511000 (+) True XLOC_011737

Expression Profile

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