RNA id: TCONS_00023320


Basic Information

Item Value
RNA id TCONS_00023320
length 4967
RNA type mRNA
GC content 0.43
exon number 11
gene id XLOC_011767
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 51743908 ~ 51760243 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCTATTGGCTGAGCTTAAAGAAGGACTTGCTTGTGATTGGTTGACAGGGTTGCCTGTTATAGTCCGTGCAAATAGGGGTTTCCTTATTGGGTAACCGGCATATTCTTGGGAGGAGGGACTTATTTAACCGGCTTTCTGTGAAAAATGTGACTGAGGATATGCGTGTGCGCGGTTTACCACAGCTACTAAATTAAATACTAATTTCACGCATAATTCGCCGTTACAGCACGCATTTTGAcctaaatatttatcaaatgaaAACTTCATGCAATTCTTGCTTGAGAGAAGTACACACCGGCCCTGGCCTTGAGGCTTATCTGAAAGGTTTCAACTTCACTGGTGAACCTCCTTGGCTGTCTGACATCTGTTAGCCACGTTTCAATCCCATCTCTTCCATTCGTCTGTTTCTTTTGCAATCAAATCTTGAACAAACACTATGACGGCTTGCACCGGATCAGACTTTGACTTCGCCTTCCTGGAGGAGGGATTCTGTGCGCGCGATATCGTGGAGCAGAAGATCAATGAGTCCTCGCTCTCAGATGATAAAGATGCCTTCTATGTGGCGGATCTGGGGGATGTCCTGAAGAAGCACCTCCGCTGGCTGCGTGTTTTGCCCCGCATCACGCCGTTTTACGCAGTGAAGTGCAACGATAGCAGGGCGGTGGTCACCACACTGGCGTCTCTGGGAGCCGGGTTCGACTGTGCCAGCAAAACGGAGATCCAGATCGTGCAGTCAGTGGGTGTGGATCCCAGCAGGATCATCTACGCCAACCCGTGCAAGCAGGTTTCGCAGATCAAATACGCCTCGGCTCACGGCGTGCAGATGATGACGTTCGACAGCGAGGTGGAGCTCATGAAGGTGGCCCGTAGCCACGAAAATGCCAAGCTGGTTCTCCGCATCGCCACAGACGACTCGAAGGCTGTTTGCAGGCTGAGTGTGAAGTTTGGAGCGACGCTGAAGAGCAGCCGGCTGCTGCTGGAGAGAGCAAAAGAGCTCGGGCTGGACGTGATCGGGGTCAGTTTCCATGTGGGCAGCGGCTGTACGGACCCGGAAACATACAGCCAGGCCATCTCAGATGCTCGCTATGTTTTCGACATTGGGGCGGAGCTGGGCTATAACATGAGCCTGCTGGACATCGGCGGAGGATTTCCAGGCTCTGAGGACACCAAACTCAAGTTTGAAGAGatTGCTGCTGTTATTAACCCTGCGCTGGATAAATACTTCCCTGTGGACTCTGGCGTGAGGATCATCGCTGAACCCGGCCGTTATTATGTAGCATCTGCTTACACACTGGCGGTCAACATCATCGCCAAAAAGGTCATCATGAAGGAGCAGTCAGCCTCCGATGAAGAAGAGGATGTGTCCAATGACCGAACCCTGATGTACTACGTGAATGACGGCGTTTATGGCTCCTTCAACTGCATCCTGTATGATCATGCGCACGTGTTGCCAACTCTGCACAAGAAACCCAAGCCCGATGAGCGCATGTACCCCTGCAGTATCTGGGGCCCGACCTGCGACGGTCTGGACCGCATTGTGGAGCAGTGCAGCCTGCCGGACATGCAGGTGGGCGACTGGCTGCTGTTCGAGAACATGGGCGCCTACACCGTCGCCGCATCCTCCACCTTCAATGGCTTCCAGAAACCCGATATTTATTACATCATGTCCCGAACAGCCTGgcagTGCATGCAGCAGATTCGTGCCCAGGGGATTCCTGCACTTCCATTGGAGGAGCCGAGCGCTGGAAACGTGCCATCCCACTGCGGGCGCGAGAGCAGTCTGGATGTTCCCGCCAAACCCTGCCCGACTCAAGTGCTGTAGCAGAAGACGCTCAACCAAACCTGCTCTCGGGTCCAGCTAATGCAGATCTGTGTTACTGATCTCCAACTTCTGATCTAAACGCCTCAGAGCTGAGGAGAAAACAAACGCACAGTCCAATTCTTATTTCCTGTTATCTTTGTTTTAACTGGTTTTTGTTGATTGTCTGTATTTGTATTTCGAGGCCAGATGCTTGAGCGAGGACTTCTTCCTCTTCCTCAGTGACCATTTCCATTTTATACTTGATtagtaacttaattttttaatattgagTTGAAGTCtttgtattataattattcaGAGCTGAGCTTGTATGCCACTGGTGCATTTGAAACGGACGTGAAAGAGATGGGATTGCATCTATTATGCTTTCCTATGGAaactgctttttgttttttttaagtattacgtttttttgtatttttatataaataaagatgcTGTAAAATGGCaagtgttttgctttttgttcacACGACGACAGAACTGCAGTATTAATGCAGGGTGTCTGCGAGGTCTTAAAGCCCGTGCACACCAAGACGTTTATTGCTCTCGTTTCTGttaacgtttaacgcctcgtgactaaataaagggcgtcaatgtgatcgtgcacaccaacgcgcaataTGGCAGGcgtaaaagcgtcatttaaaaaagaaatacccCATGCTCGTTTTTTgtttgacgccagtgaaaatcgattgGGTTTAAATCCGGAAAAACGTCTTGAAAACGCTAACGATAAATtcaaacgaaaagcgtcctggTTTGTACGAGCCTTTAAAGTACGGAACCCCGTTCCCgccactgaattaaaaaaaaataataattaaaaacaaatttagtcagacttgcgagttataaagtcagaattcgaAATTAagttgcaattctgacttaataactcgcaattctgacttaactagCAATTTTGACTTGCTTAACTCGCAATTCCGATTTACTTAACTCGTAATTCTGACTGACTTAACGcctaattctgacttaataactcgcaattctaacttacttaactcgcaattctgacttaaaaacTCGCAATTTTGACTTGCTAAACTCGCAATTCCGATTTACTTAACTCGTAATTCTGACTGACTTAACGcctaattctgacttaataactcaattctgacttaactcgcAATTTTGACTTGCTAAACTTGCAATTCTGATTTACTTAACTCGTAATTCTGGCTTAAAAACtcgcaattttgactttttaataaaaaatatatgtgtatataacaAAATGTTAGGCCTTAAAAGGTCTTACATTTATAGAAATTTTGTGTTGTacatcttaaatcattttaaacgtgTCTTAATCTTTCTTTATGTGAAGTTACCCAATCATCGCTACCAGTTATTCAGTCTaaaaacttttttactttttccaTTTACCAAAAAGCAATATGTTGTATTTATCTTTCTtacaataactttttatttgcataaattaaattgtattatagttttaGTTTAGTCCATAAACCCAGCTTAGAGGAacaagccaggcttattttggtaagtcaggtttattaatggcggatTCGGTGTCATAAATCAAATTTGCGATAGTACTAAATGTTACTATGGCAACatatgctgggaaactagcctgtCCGGGGCAGGCTAACTCTCAGGCTTAGTGAAGTTCAAGCTTAATCAAGCTAATGTTAACATTCACCTGCtgtaatttgatgtcattttaattcacttaacctcttaataatgaataaaacttCAGTCATGTAATAGTAAATATACATACACCACATCTTTAAGAACAAAATGGTAATACACTTAAATTCAAATGTTATTGCAAacagtgatgcagtggcgcagtaggtagtgctgtcgcctcacagcaagaaggttgctgcttagagcctcggctcagatggcgtttctgtgagtttgcatgttctccctgtgttagcgtgggtttcctccgggtgctccggtttcccccacagtccaaacacatgcgatacgggtgaattaggtaggctaaattgtctgtagtgtgtgtggaagtttcccagacatgggttgcagctggaagggcatccactgcgtaaaaacgagctggataagttggtggttcattccactgtggcgaccctggattaataaagggactatgaatgaatgaatgttattgcaaacaaaacaaatacaaacttcaacatttaaactcttttttttttttaatgtttatgttgattttttttcctgtttattaaaattttactttataattttactcagcatattataacatatTATGTACTCATTTGTGGACTGTGATCTTCAGTTTACTTGTTGTTAGATTAGCTTCAATTTTTGCTTTGGcactgaataatctaatgtatatgcacaaacatattATCGTGAAGCATTCtgaagaaaatattactttaaaatgttGAGGGATGTACTTTGCTAAATATGTAGTATATGAATTACAAAATTTAATAAAGGAAATATATTAAGAAAGCAATGACTGATATTAAGAAGCAACTACATTATTTTAAGAAGGACTTTAAAGCTGCAAACCCTGAGTGGTATAATCAGGTGATGGATCCGGGCCGAGCGGTAGcctcacttttatttaaagagatTTTCCCACCGGTGCGGCTCATTGAAGtcagtttttttactttaatccCCGCTCTTCTTGACCACTTTTATGAACCAGCCCCctggtctgcatccagacctctcTCAAAACTTCAGGTGTTGTAGTTTTGCGGTCCTTATGTCTGTATTTTTGTGGTTACTACCGTTCAAAACGTCCGTGTTTCTTTTCATAGTGGCGTTTCTTGGGGtaaaataaacctttacttaTCTGCATATTCACTTGAACTGTCGATTCTCTTTATCAAGTTACTTTTCCGTAAGGATCCGGACAAGAGTCCGGGCTTTGAGAAGCTCTGCAGTTCATGCTTAGTTATTAGTATTTACTGTAATCGTGGGTGTAGCGCCATCTAGTGATGAGGACTCAATGTTTCTAATAGCAGCAAGGCTAGAAGTttgatccattcattcatccattttcttttcggttcagtccctttattaatctagagtcgccacagtggaatgaaccgccaacttatccagca

Function

GO:

id name namespace
GO:0006596 polyamine biosynthetic process biological_process
GO:0033387 putrescine biosynthetic process from ornithine biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0005737 cytoplasm cellular_component
GO:0004586 ornithine decarboxylase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00330 Arginine and proline metabolism
ko00480 Glutathione metabolism

ZFIN:

id description
ZDB-GENE-010816-1 Predicted to enable ornithine decarboxylase activity. Acts upstream of or within eye photoreceptor cell development. Predicted to be active in cytoplasm. Is expressed in neuromast and ovary. Orthologous to several human genes including ODC1 (ornithine decarboxylase 1).

Ensembl:

ensembl_id ENSDART00000190955

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024779 lncRNA upstream 126086 51493080 ~ 51618364 (+) False XLOC_011761
TCONS_00024781 lncRNA upstream 126086 51576405 ~ 51618364 (+) True XLOC_011761
TCONS_00024780 lncRNA upstream 248044 51493931 ~ 51496406 (+) True XLOC_011762
TCONS_00024778 lncRNA upstream 312812 51416465 ~ 51431638 (+) True XLOC_011760
TCONS_00024777 lncRNA upstream 326046 51416465 ~ 51418404 (+) False XLOC_011760
TCONS_00024783 lncRNA downstream 61453 51821696 ~ 51825482 (+) False XLOC_011769
TCONS_00024784 lncRNA downstream 61519 51821762 ~ 51825482 (+) False XLOC_011769
TCONS_00024785 lncRNA downstream 61631 51821874 ~ 51825482 (+) False XLOC_011769
TCONS_00024786 lncRNA downstream 62037 51822280 ~ 51825482 (+) True XLOC_011769
TCONS_00024787 lncRNA downstream 235868 51996111 ~ 52053951 (+) False XLOC_011772
TCONS_00023317 mRNA upstream 23647 51682429 ~ 51720803 (+) True XLOC_011766
TCONS_00023316 mRNA upstream 106244 51627209 ~ 51638206 (+) True XLOC_011765
TCONS_00023315 mRNA upstream 132362 51520073 ~ 51612088 (+) False XLOC_011764
TCONS_00023314 mRNA upstream 132362 51520073 ~ 51612088 (+) True XLOC_011764
TCONS_00023313 mRNA upstream 164180 51520073 ~ 51580270 (+) False XLOC_011764
TCONS_00023323 mRNA downstream 4067 51764310 ~ 51789748 (+) True XLOC_011768
TCONS_00023324 mRNA downstream 145810 51906053 ~ 51929012 (+) False XLOC_011770
TCONS_00023325 mRNA downstream 145903 51906146 ~ 51924886 (+) True XLOC_011770
TCONS_00023327 mRNA downstream 180525 51940768 ~ 52053880 (+) False XLOC_011772
TCONS_00023328 mRNA downstream 539775 52300018 ~ 52386518 (+) True XLOC_011776
TCONS_00023279 other upstream 2233450 49510866 ~ 49511000 (+) True XLOC_011737
TCONS_00023246 other upstream 4352816 47391517 ~ 47391634 (+) True XLOC_011719
TCONS_00023244 other upstream 4546458 47197876 ~ 47197992 (+) True XLOC_011717
TCONS_00023235 other upstream 4895104 46849249 ~ 46849346 (+) True XLOC_011710
TCONS_00023232 other upstream 5308217 46387217 ~ 46436233 (+) True XLOC_011705
TCONS_00023326 other downstream 147828 51908071 ~ 51908186 (+) True XLOC_011771
TCONS_00023329 other downstream 764112 52524355 ~ 52537436 (+) False XLOC_011778
TCONS_00023331 other downstream 768255 52528498 ~ 52531702 (+) False XLOC_011778
TCONS_00023332 other downstream 774323 52534566 ~ 52552933 (+) True XLOC_011778
TCONS_00023337 other downstream 864604 52624847 ~ 52630072 (+) True XLOC_011780

Expression Profile

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