RNA id: TCONS_00024782


Basic Information

Item Value
RNA id TCONS_00024782
length 540
lncRNA type sense_over
GC content 0.31
exon number 2
gene id XLOC_011767
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 51743908 ~ 51760243 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCGTTCCCgccactgaattaaaaaaaattaataactcgcaattctgacttaactagCAATTTTGACTTGCTTAACTCGCAATTCCGATTTACTTAACTCGTAATTCTGACTGACTTAACGcctaattctgacttaataactcgcaattctaacttacttaactcgcaattctgacttaaaaacTCGCAATTTTGACTTGCTAAACTCGCAATTCCGATTTACTTAACTCGTAATTCTGACTGACTTAACGcctaattctgacttaataactcaattctgacttaactcgcAATTTTGACTTGCTAAACTTGCAATTCTGATTTACTTAACTCGTAATTCTGGCTTAAAAACtcgcaattttgactttttaataaaaaatatatgtgtatataacaAAATGTTAGGCCTTAAAAGGTCTTACATTTATAGAAATTTTGTGTTGTacatcttaaatcattttaaacgtgTCTTAATCTTTCTTTATGTGAAGTTACCCAATCATCGCTACCAGTTATTCAGTCTaaaaacttttttacttt

Function

GO:

id name namespace
GO:0006596 polyamine biosynthetic process biological_process
GO:0033387 putrescine biosynthetic process from ornithine biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0005737 cytoplasm cellular_component
GO:0004586 ornithine decarboxylase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00330 Arginine and proline metabolism
ko00480 Glutathione metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024779 lncRNA upstream 139528 51493080 ~ 51618364 (+) False XLOC_011761
TCONS_00024781 lncRNA upstream 139528 51576405 ~ 51618364 (+) True XLOC_011761
TCONS_00024780 lncRNA upstream 261486 51493931 ~ 51496406 (+) True XLOC_011762
TCONS_00024778 lncRNA upstream 326254 51416465 ~ 51431638 (+) True XLOC_011760
TCONS_00024777 lncRNA upstream 339488 51416465 ~ 51418404 (+) False XLOC_011760
TCONS_00024783 lncRNA downstream 63190 51821696 ~ 51825482 (+) False XLOC_011769
TCONS_00024784 lncRNA downstream 63256 51821762 ~ 51825482 (+) False XLOC_011769
TCONS_00024785 lncRNA downstream 63368 51821874 ~ 51825482 (+) False XLOC_011769
TCONS_00024786 lncRNA downstream 63774 51822280 ~ 51825482 (+) True XLOC_011769
TCONS_00024787 lncRNA downstream 237605 51996111 ~ 52053951 (+) False XLOC_011772
TCONS_00023318 mRNA upstream 341 51743908 ~ 51757551 (+) False XLOC_011767
TCONS_00023322 mRNA upstream 758 51746830 ~ 51757134 (+) False XLOC_011767
TCONS_00023319 mRNA upstream 6654 51744012 ~ 51751238 (+) False XLOC_011767
TCONS_00023321 mRNA upstream 8371 51744593 ~ 51749521 (+) False XLOC_011767
TCONS_00023317 mRNA upstream 37089 51682429 ~ 51720803 (+) True XLOC_011766
TCONS_00023323 mRNA downstream 5804 51764310 ~ 51789748 (+) True XLOC_011768
TCONS_00023324 mRNA downstream 147547 51906053 ~ 51929012 (+) False XLOC_011770
TCONS_00023325 mRNA downstream 147640 51906146 ~ 51924886 (+) True XLOC_011770
TCONS_00023327 mRNA downstream 182262 51940768 ~ 52053880 (+) False XLOC_011772
TCONS_00023328 mRNA downstream 541512 52300018 ~ 52386518 (+) True XLOC_011776
TCONS_00023279 other upstream 2246892 49510866 ~ 49511000 (+) True XLOC_011737
TCONS_00023246 other upstream 4366258 47391517 ~ 47391634 (+) True XLOC_011719
TCONS_00023244 other upstream 4559900 47197876 ~ 47197992 (+) True XLOC_011717
TCONS_00023235 other upstream 4908546 46849249 ~ 46849346 (+) True XLOC_011710
TCONS_00023232 other upstream 5321659 46387217 ~ 46436233 (+) True XLOC_011705
TCONS_00023326 other downstream 149565 51908071 ~ 51908186 (+) True XLOC_011771
TCONS_00023329 other downstream 765849 52524355 ~ 52537436 (+) False XLOC_011778
TCONS_00023331 other downstream 769992 52528498 ~ 52531702 (+) False XLOC_011778
TCONS_00023332 other downstream 776060 52534566 ~ 52552933 (+) True XLOC_011778
TCONS_00023337 other downstream 866341 52624847 ~ 52630072 (+) True XLOC_011780

Expression Profile

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