RNA id: TCONS_00024783


Basic Information

Item Value
RNA id TCONS_00024783
length 3070
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_011769
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 51821696 ~ 51825482 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCACACTGTTTTTGTCACGTGTGAATattaaaatagaatttaaaaggggaggagctactctatgctcCGCTCTCTCTTCAAATTTAAGTTGAGattgtcaaacatcaaataaaaaaggcTCATTTCAAAGTGCGTAACTggatcttttaaaaaataatgcaacaaaCAAGATGTCAGAGACAACAGAAGCACGCAGAACTGCTTTCCTCTACCCACCAACATTTTATTTGATCTCTTAGATTAGATTTTCCATAAAGAATTGGAataatacaatgcaatacttacAAAATGGAATCAAAACCTAAAAACGGGGCCGATCATCTTCACGTCTGATAAAAACAAAAGGGTTCGTGGAATTGTATGAAAAGCAGGTGAAATTTAACATTGACTGCAATCATTTTTTTTGGATCTGGAACCACAGTTTCTACCGAGACTGGTGTCTTGTCAATCGTAGATGACGGATTAGTACAGTGCTTGTGCTAAAATTAAAGCAAAATTTCttatcaaattaaaacaaaagtggCTTGGAAGGTGACACTGTCAATAgtgttaaaaaaatcattaaaaattgctaaaaaaaataatgaaaaaatcaaAGTACTGATACTAtagtacaaaaaaaaaggttaaaatgaCAGCATGACAGACAGATAGCATCGTCTGGGCCCTGTGCGATTTACAGATCCTCCAAAACCCAGTCCGTTCTGATTATCTATTTACAAAAAGACGAACATCCAAACTATGCATGGTGGCCAGAAGACTTTAACCAAATGACGAAAGAGACGAGACATGAAAACCGTCCCTTCacgctcatatatatatatatatatatatagatttgctCTTTTCCAGTATGCACACAAAATACGCCTGCACCTTTGGAAAGATTATTTACAGCTCTTCAGTTAAATCTCAAAGctatttaaaatatacttaatgcataaaaataaagattttggcATTCTCTTGCTTCTTCCTCTTCGTCCGTGAAGTGGCTAGTCCTTCAGGTAGCCAGCAGTCATCCAGCCTGCCAGGGGGTGCTGTGAGTCGGGTTAGTCCTCAACAATATGGGGAGCATCTATAGAATCCATTCACCATCATCTCCAATTCATCTCAGATAAAAGTAGTTGtatttgctgtgttttttttccGAGGGGGTGTTGGGGGGCACCTTCATCAACCCCCGTCCAGGTCTCCATTAGTTCATATCACAAGCAAAAATCCAAATACggacaaactaacaaaacaaaacaaaaaactaaagagtggctgagagagctgcaatttaagaaaacacatgcagttTAAAGAAAACGgaaattaagaaaagatcctcATCGGTTTGACAGCATACCCAAAACccaaacacattaataaaatacgcTGCATTTtctacaacacatgcaaatagcaaTGAACCTAAAGGGGACCCTAAAACGTGACGGATGTGGCTATATAAGTTATGATTATTCAGGCTAATAAAATACTACAGAATAGCGTAATCAGGATGTTAAATACACAACAAAACTCTGCTTTcgaagatcacctacaacttcactgagcaatatcCACGGCACAATAAACAAATCCCAGCAGGGGAGCCACGTTTTTAAGTCCCATTGAAACATTTCCGTTTCGCATTGCCCTATTTGaatgaaaatgcagcacgttttattaaagtgtttgcgttgtgaggatttgctgTCAAACTAACgaggatcttttcttaatttgctggtgtttttagcAATTGCATGTGCTTACCTAAATTGCGCGATGTTAAGCTCTCTTGGGGACCGTAAAAGATGGAGATAAGGATCTGAAGTGGTATTAAGGTGTCGTTCCCTGTGTGATTGGCTCGCCATTAAATCGAATTGTCTTTCAAGGTCGCTTCTTCCACCCCCGTTCGCATCTCCATTAGTTCAtatcacaagaaaaaaaacaaatatggacGAACTAACAAAAAACAAAGGAGTGGCTAAAAGAGCTGCAATTTAAGTAATCACatgcaattattattaataacgtcagcaaattaagaaaagattttCGGATTGACTGCATACATGATGCGAATCCTCACAACCcaaacacattaataaaacacgctacattttctcacaacacatgcaaatagcatgGAACACAGCGGAAATGTTTTAAGGGGACCCTAAAATGTGACGGATGCCACTATATAGGTTATTTAtgctaataaaatactaaAGAATAGCGTAATCAGGATGTTAAATACAGAaaaacttcactgagcaatagccATGACACAAACAAATCCCGGCCAGTCCGTCACGTTTTTTAGGTCTCCTTGAAATATTTCCATTCTGTTCCGTGCTATTTGCATGAAAATGCAGcaccttttattttaatatgtttgcgTTGTGAGGTGTTTTTAGTAATTGcatatgttttcttaaattgcgcGATGTTAAGCTTTCTTGGGGACCGTAAAAGATGGAGATAAAGATCTGAAGTGGTTTTGACGAGTCGTTCCCTGTATGGTTGGCTTGCTATCAAATTGAATTGTCTTTCAAAGTTGCTTCATCTCATTGTTCCTCAAAGTCgcttgtttgctgttttgttgtttatcttGAATGTTTTGAGGAGATTCATCAACCCCCGTCTGTGTCACCATTAGTTCATatcacaaacaaaaaacaaatacggACAAACTAAGAACAAATGAAAGCTGGAGATGTGGATCTGAAGCGGTTTGCGGAGTCGTTCCCCGTTCCCTGTATGGTTGGCTCGCCATTGTCCCTAAAAgtctcttgtttttgttgtttgtccTTATAGTTGGATCTTGTTTTGTGAAGCTTGCAGGGGGGTTGTTGCATCTTCATCAACTCCATCTGTGTCTCCATTAGTTCATATCATTATCATCAGAAACCAAATATGGATaacctgccaaaaaaaaaaaaaaaacgaaagctGGAGATGTGGATCTGAAGTGGTCTTGAGGAGTCGTTCCCTGTATGGTTGGCTCGCCATTTAATCTCATAGTCCTTTAAAGTCTCTTGTTTGTTATCCTTATAGCTGGATCTCGAATGTTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024782 lncRNA upstream 63190 51757892 ~ 51758506 (+) True XLOC_011767
TCONS_00024779 lncRNA upstream 203332 51493080 ~ 51618364 (+) False XLOC_011761
TCONS_00024781 lncRNA upstream 203332 51576405 ~ 51618364 (+) True XLOC_011761
TCONS_00024780 lncRNA upstream 325290 51493931 ~ 51496406 (+) True XLOC_011762
TCONS_00024778 lncRNA upstream 390058 51416465 ~ 51431638 (+) True XLOC_011760
TCONS_00024787 lncRNA downstream 170629 51996111 ~ 52053951 (+) False XLOC_011772
TCONS_00024507 lncRNA downstream 222559 52048041 ~ 52053951 (+) True XLOC_011772
TCONS_00024788 lncRNA downstream 304210 52129692 ~ 52130818 (+) True XLOC_011773
TCONS_00024789 lncRNA downstream 305814 52131296 ~ 52135039 (+) True XLOC_011774
TCONS_00024508 lncRNA downstream 445815 52271297 ~ 52272517 (+) True XLOC_011775
TCONS_00023323 mRNA upstream 31948 51764310 ~ 51789748 (+) True XLOC_011768
TCONS_00023320 mRNA upstream 61453 51744450 ~ 51760243 (+) False XLOC_011767
TCONS_00023318 mRNA upstream 64145 51743908 ~ 51757551 (+) False XLOC_011767
TCONS_00023322 mRNA upstream 64562 51746830 ~ 51757134 (+) False XLOC_011767
TCONS_00023319 mRNA upstream 70458 51744012 ~ 51751238 (+) False XLOC_011767
TCONS_00023324 mRNA downstream 80571 51906053 ~ 51929012 (+) False XLOC_011770
TCONS_00023325 mRNA downstream 80664 51906146 ~ 51924886 (+) True XLOC_011770
TCONS_00023327 mRNA downstream 115286 51940768 ~ 52053880 (+) False XLOC_011772
TCONS_00023328 mRNA downstream 474536 52300018 ~ 52386518 (+) True XLOC_011776
TCONS_00023330 mRNA downstream 698970 52524452 ~ 52553447 (+) False XLOC_011778
TCONS_00023279 other upstream 2310696 49510866 ~ 49511000 (+) True XLOC_011737
TCONS_00023246 other upstream 4430062 47391517 ~ 47391634 (+) True XLOC_011719
TCONS_00023244 other upstream 4623704 47197876 ~ 47197992 (+) True XLOC_011717
TCONS_00023235 other upstream 4972350 46849249 ~ 46849346 (+) True XLOC_011710
TCONS_00023232 other upstream 5385463 46387217 ~ 46436233 (+) True XLOC_011705
TCONS_00023326 other downstream 82589 51908071 ~ 51908186 (+) True XLOC_011771
TCONS_00023329 other downstream 698873 52524355 ~ 52537436 (+) False XLOC_011778
TCONS_00023331 other downstream 703016 52528498 ~ 52531702 (+) False XLOC_011778
TCONS_00023332 other downstream 709084 52534566 ~ 52552933 (+) True XLOC_011778
TCONS_00023337 other downstream 799365 52624847 ~ 52630072 (+) True XLOC_011780