RNA id: TCONS_00024787


Basic Information

Item Value
RNA id TCONS_00024787
length 1898
lncRNA type sense_over
GC content 0.56
exon number 12
gene id XLOC_011772
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 51940768 ~ 52053951 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGGTCCAGTCATCTGACCAGCACACACAGCCCAAAGTCAATCTGCTCCACATCCTCCAGCAGGGCTGGGACCTCAGTAAAGTTCAAGCCCGCATGGCCTTCTCCTCATACCTGCACCGCGTTCAGCTGCGCCTGCTAGCTGAGAGCAGAGCGAACAGAAGCCCGGCCTGGACACAGAAGGAGCACGATCAGATGgagctGGTTGTACGTTTTCTAAAGCGAGCCAGCAGTAATCTGCATCAGGGCATGAGTGTGAAGGAGCCCAGTCTGCATCTGTGTCTGCAGGAGCGCCAACACATCCTCTCACAGCAGCTCGAAAGCTTTATCCAGCTCTACGACCAGGAAACCAAGCAAATGGTGCAGAGTTTGGAGCCGATGACAGATGAAGGTCGCTGCATCAACTCCACCGTTTTCCAGGAGTTCATTCTGGAGGCCAGCGAAAGCGACCTGGAGGAAGTGCTGACCTTCTACACTCAGAAGAACAAGTCTGCCAGTGTGTTTCTGGGCACAAAGTGTCACCGAGTCAAGAAGAGCAGCGAGGAGAAGCCGGAGACTGCACATGTCAACACAGGCACATCTGGAGGTGTAGAGAATACAGCGGCAATCAGCAAAACCCAAAGTGCAGACAGTAACACAGCAACTCCAGCAGGAGACCAGCGGCAAAATCATCCAACCAGCACTGAAAACTGTGCTGCAGCTAAAAACACCGGCAAAATCAAGTGCATCTCGTTGCGAAATCCCACCCAAAGCGGAGACTGCAGCGCTAATGAAGCGCCAGCCAACGACACAGAAGACATAACCAGGAAAACTGCAGTCAGAAACAAGAAAACGCAGCTAAAAACAGCGTACAGCGCAGCTCTGGAGTGTGAACACATCATTTTACAGCACGCCGTCCCTCCAGAACCACCACCGTACCTGCAGCCGCCCCCACACCCGCTAGCCAACACCAGCACATGGGCTTCAGCTACGCACACAGCTCCCTCCATCTCCATCCAGAGACCCTCACGGCCGTCCTCTGCAGGACACGTGATTCACAGCTCCAGCATCAGTAAGTTGAGGCCTGGGTCAGCCGGTGTTGTCAAGGAGACGGACTCTCTGACGACCCAGGCTCAGTCCAACCAGCAGGCCATCGTGTCTGCTCTGAGGAAACTGGTGGAGAAGCAGACGGCACGCCAGTACAGCACATCCAGCCACATCAGCCTGCTCACACAACACCTGACTAATCTGAATCTGGCCAATGGGCTCTTCAGCAGAGGCGGACTCACGTTGGCTCCCGGGGTTCCACATGAACCTGTGAGAACGGTTCATAAAGACACCACCGCCGGGAACTCTAGTCTCAGGCCTGCGTGTGAATCCGAGTCGGTGTGTGATGGTGATCCGGGCAGTCAGAAGCAGCGGTCGGCCGCGGGCAGCTATCAGCTTCAGTTCGCCATCCAGCAGCTCCAGCAGCAGAAACTCAGATCCAGACAGCTGCTGGACCAGAGCCGCACACGCCACCAGGCTGTTCTGGCATCCCACGCACACACACCAGCGGCTTCAGCTCGACCTGTGGCTCCCAGCAGTCCTGTGAAACAGCCCTTCATTCGCACCCTGAACCAGACGAGTGGGATCCTGACGCCCAAACCCCCCAGCAGCACCCCGAGAGACGGACGCGCACGCAAGACTCTCACACACTCCACAGTGCACAGGACAGCTTTATCTGAGACTCCAGCTGCTCACACGACCACCAGTGGACAACATGTGGTGTATGACACTGTGTGCGCAAAGACAGgTCTGTCGGTGTACAGTAAACTCTTCCACACTCAGGGCTCCAGGAACAGATGAATGACCATCAGCTGCTCTCTGGGATACTTTTACACActcatgaaacccccctgtcaGAAACTCACAGCCTC

Function

GO:

id name namespace
GO:0018095 protein polyglutamylation biological_process
GO:0006464 cellular protein modification process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005929 cilium cellular_component
GO:0005524 ATP binding molecular_function
GO:0015631 tubulin binding molecular_function
GO:0070740 tubulin-glutamic acid ligase activity molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024783 lncRNA upstream 170629 51821696 ~ 51825482 (+) False XLOC_011769
TCONS_00024784 lncRNA upstream 170629 51821762 ~ 51825482 (+) False XLOC_011769
TCONS_00024785 lncRNA upstream 170629 51821874 ~ 51825482 (+) False XLOC_011769
TCONS_00024786 lncRNA upstream 170629 51822280 ~ 51825482 (+) True XLOC_011769
TCONS_00024782 lncRNA upstream 237605 51757892 ~ 51758506 (+) True XLOC_011767
TCONS_00024788 lncRNA downstream 75741 52129692 ~ 52130818 (+) True XLOC_011773
TCONS_00024789 lncRNA downstream 77345 52131296 ~ 52135039 (+) True XLOC_011774
TCONS_00024508 lncRNA downstream 217346 52271297 ~ 52272517 (+) True XLOC_011775
TCONS_00024509 lncRNA downstream 419807 52473758 ~ 52474091 (+) True XLOC_011777
TCONS_00024790 lncRNA downstream 470404 52524355 ~ 52552933 (+) False XLOC_011778
TCONS_00023324 mRNA upstream 67099 51906053 ~ 51929012 (+) False XLOC_011770
TCONS_00023325 mRNA upstream 71225 51906146 ~ 51924886 (+) True XLOC_011770
TCONS_00023323 mRNA upstream 206363 51764310 ~ 51789748 (+) True XLOC_011768
TCONS_00023320 mRNA upstream 235868 51744450 ~ 51760243 (+) False XLOC_011767
TCONS_00023322 mRNA upstream 238977 51746830 ~ 51757134 (+) False XLOC_011767
TCONS_00023328 mRNA downstream 246067 52300018 ~ 52386518 (+) True XLOC_011776
TCONS_00023330 mRNA downstream 470501 52524452 ~ 52553447 (+) False XLOC_011778
TCONS_00023334 mRNA downstream 558915 52612866 ~ 52631314 (+) False XLOC_011780
TCONS_00023333 mRNA downstream 558915 52612866 ~ 52631314 (+) False XLOC_011780
TCONS_00023335 mRNA downstream 558915 52612866 ~ 52643968 (+) False XLOC_011780
TCONS_00023326 other upstream 87925 51908071 ~ 51908186 (+) True XLOC_011771
TCONS_00023279 other upstream 2485111 49510866 ~ 49511000 (+) True XLOC_011737
TCONS_00023246 other upstream 4604477 47391517 ~ 47391634 (+) True XLOC_011719
TCONS_00023244 other upstream 4798119 47197876 ~ 47197992 (+) True XLOC_011717
TCONS_00023235 other upstream 5146765 46849249 ~ 46849346 (+) True XLOC_011710
TCONS_00023329 other downstream 470404 52524355 ~ 52537436 (+) False XLOC_011778
TCONS_00023331 other downstream 474547 52528498 ~ 52531702 (+) False XLOC_011778
TCONS_00023332 other downstream 480615 52534566 ~ 52552933 (+) True XLOC_011778
TCONS_00023337 other downstream 570896 52624847 ~ 52630072 (+) True XLOC_011780
TCONS_00023367 other downstream 1377321 53431272 ~ 53444454 (+) False XLOC_011802

Expression Profile

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