RNA id: TCONS_00024788


Basic Information

Item Value
RNA id TCONS_00024788
length 1017
lncRNA type inter_gene
GC content 0.26
exon number 2
gene id XLOC_011773
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 52129692 ~ 52130818 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAACATTTTAACTTTATTCTCGTAACATTTCAACTTTATTCTCGTAACATTTCAACTTTATTCTCGTAACATTTCAGCTTTATTCTCGTAACATTTCAACTTTATTCTCGTAACATTTCAACTTTATTCTCATAACATTTCAACTCTATTATCGTAACATTTTAACTTTATTCTCTTAACATTTCAACTTTATTCTCGTAACATTTCAACTTTATTCTCGTAACATTTCAGCTTTATTCTCGTAACATTTCAACTTTATTCTcgtaacattttaaatttattctCGTAACATTTCAAATTTATTCTCGTAACATTTCAACTTTATTCTCGTAACATTTCAGCTTTATTCTCGTAACATTTCAACTTTATTCTCGTAACATTTCAACTTTATTCTCATAACATTTCAACTCTATTATCGTAACATTTTAACTTTATTCTCTTAACATTTCAACTTTATTCTCGTAACATTTCAACTTTATTCTCGTAACATTTCAGCTTTATTCTCATAACATTTCAACTTTATTCTCGTAACATTTCAACTCTATTATCGTAACATTTTAACTTTATTCTCTTAACATTTCAACTTTATTCTCGTAACATTTCAAATTTATTCTCGTAACATTTCAACTTTATTCTCATAACATTTCAACTTTATTCTCGTAACATTTCAACTTTATTCTTGTAACATTTCGACTTTATTCTCGTAACATTTCAACTTTATTCttgtaacatttacattttttttctcgtaacattttaactttattcttgtaacATTTGAACTTTATTCTCGtaacaaaatgtattaattctaaATTCTAAACTAAACCCCTGAAGCCCTTTCCATTTTGATTTATCTCAAATTTTTCAGCTGTCATCCAATCAATTCCTGATGAATACAATCAAGTTATGTCCTGGTTTTATTTCTTTCAGAATTACCTCAGATTATAGGAATCAATCTTTATCTTTATTTGTCTCCTATAAGGAGAATTTTTTTTCTTGGACAATTAAGAGAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024787 lncRNA upstream 75741 51996111 ~ 52053951 (+) False XLOC_011772
TCONS_00024507 lncRNA upstream 75741 52048041 ~ 52053951 (+) True XLOC_011772
TCONS_00024783 lncRNA upstream 304210 51821696 ~ 51825482 (+) False XLOC_011769
TCONS_00024784 lncRNA upstream 304210 51821762 ~ 51825482 (+) False XLOC_011769
TCONS_00024785 lncRNA upstream 304210 51821874 ~ 51825482 (+) False XLOC_011769
TCONS_00024789 lncRNA downstream 478 52131296 ~ 52135039 (+) True XLOC_011774
TCONS_00024508 lncRNA downstream 140479 52271297 ~ 52272517 (+) True XLOC_011775
TCONS_00024509 lncRNA downstream 342940 52473758 ~ 52474091 (+) True XLOC_011777
TCONS_00024790 lncRNA downstream 393537 52524355 ~ 52552933 (+) False XLOC_011778
TCONS_00024791 lncRNA downstream 422886 52553704 ~ 52582790 (+) False XLOC_011779
TCONS_00023327 mRNA upstream 75812 51940768 ~ 52053880 (+) False XLOC_011772
TCONS_00023324 mRNA upstream 200680 51906053 ~ 51929012 (+) False XLOC_011770
TCONS_00023325 mRNA upstream 204806 51906146 ~ 51924886 (+) True XLOC_011770
TCONS_00023323 mRNA upstream 339944 51764310 ~ 51789748 (+) True XLOC_011768
TCONS_00023320 mRNA upstream 369449 51744450 ~ 51760243 (+) False XLOC_011767
TCONS_00023328 mRNA downstream 169200 52300018 ~ 52386518 (+) True XLOC_011776
TCONS_00023330 mRNA downstream 393634 52524452 ~ 52553447 (+) False XLOC_011778
TCONS_00023334 mRNA downstream 482048 52612866 ~ 52631314 (+) False XLOC_011780
TCONS_00023333 mRNA downstream 482048 52612866 ~ 52631314 (+) False XLOC_011780
TCONS_00023335 mRNA downstream 482048 52612866 ~ 52643968 (+) False XLOC_011780
TCONS_00023326 other upstream 221506 51908071 ~ 51908186 (+) True XLOC_011771
TCONS_00023279 other upstream 2618692 49510866 ~ 49511000 (+) True XLOC_011737
TCONS_00023246 other upstream 4738058 47391517 ~ 47391634 (+) True XLOC_011719
TCONS_00023244 other upstream 4931700 47197876 ~ 47197992 (+) True XLOC_011717
TCONS_00023235 other upstream 5280346 46849249 ~ 46849346 (+) True XLOC_011710
TCONS_00023329 other downstream 393537 52524355 ~ 52537436 (+) False XLOC_011778
TCONS_00023331 other downstream 397680 52528498 ~ 52531702 (+) False XLOC_011778
TCONS_00023332 other downstream 403748 52534566 ~ 52552933 (+) True XLOC_011778
TCONS_00023337 other downstream 494029 52624847 ~ 52630072 (+) True XLOC_011780
TCONS_00023367 other downstream 1300454 53431272 ~ 53444454 (+) False XLOC_011802

Expression Profile

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