RNA id: TCONS_00023331


Basic Information

Item Value
RNA id TCONS_00023331
length 706
RNA type processed_transcript
GC content 0.45
exon number 2
gene id XLOC_011778
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 52524355 ~ 52553447 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTATAGCAGCTAGTCAGTGTGTCAGCTTCCAGAACAGCCCGTGAGTGTCTCTGAGCTCTGACATTTCCTATGGATGCGGATAAAATGTAAGATCTCACCACACTGTGTGTTTTTCAGGAGGTGTGAGACCCGCTCTAGTGTCTATCAGATCAGATACTTCAAGACCACAGCTGCTCACAGGAATGAAGTCATTACAGTAAAAACCCCAGCGTTTGCGGAGTCTGTCACAGAGGGAGATGTCAGGTGGGAGAAAGGTAAGAAGGCAACATGTTTTTCCTTGTTTCTTCAATAAATCGACGCTATAAATGAATCTTGCAGCTTTAAACGTATTAGTAAAAATATGAgttaaattaaagggatagttcacccaaaaatcaaaatgTCCTCACTATATGCACTACCTCAagtgctcattcattttcctttggcttagtctcttatttatcaggggtcaccacagcggaatgaaccaccaactattccagcatatgttttacgcagcggatgccctttaatccccaacccagtactggaaaacacacattcatgcacaaaagccaatttagctcatcaatTCTcccatagcacatgtgtttggactgtgggggaaactggagcacccggtggaaacccacgccaacacggggagaacatgcaaactccacacagaaacagcccCTGTAGgcactcgaaccagccacctt

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0070584 mitochondrion morphogenesis biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0060047 heart contraction biological_process
GO:0045252 oxoglutarate dehydrogenase complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00310 Lysine degradation
ko00380 Tryptophan metabolism

ZFIN:

id description
ZDB-GENE-030326-1 Predicted to enable dihydrolipoyllysine-residue succinyltransferase activity. Acts upstream of or within several processes, including ATP biosynthetic process; heart contraction; and mitochondrion morphogenesis. Predicted to be part of oxoglutarate dehydrogenase complex. Is expressed in several structures, including immature eye; musculature system; nervous system; neural plate; and segmental plate. Human ortholog(s) of this gene implicated in Alzheimer's disease and paraganglioma. Orthologous to human DLST (dihydrolipoamide S-succinyltransferase).

Ensembl:

ensembl_id ENSDART00000145676

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024509 lncRNA upstream 54407 52473758 ~ 52474091 (+) True XLOC_011777
TCONS_00024508 lncRNA upstream 255981 52271297 ~ 52272517 (+) True XLOC_011775
TCONS_00024789 lncRNA upstream 393459 52131296 ~ 52135039 (+) True XLOC_011774
TCONS_00024788 lncRNA upstream 397680 52129692 ~ 52130818 (+) True XLOC_011773
TCONS_00024507 lncRNA upstream 474547 52048041 ~ 52053951 (+) True XLOC_011772
TCONS_00024791 lncRNA downstream 22002 52553704 ~ 52582790 (+) False XLOC_011779
TCONS_00024792 lncRNA downstream 49341 52581043 ~ 52590848 (+) True XLOC_011779
TCONS_00024793 lncRNA downstream 126337 52658039 ~ 52662430 (+) False XLOC_011781
TCONS_00024794 lncRNA downstream 126932 52658634 ~ 52660087 (+) True XLOC_011781
TCONS_00024795 lncRNA downstream 137272 52668974 ~ 52671734 (+) False XLOC_011782
TCONS_00023328 mRNA upstream 141980 52300018 ~ 52386518 (+) True XLOC_011776
TCONS_00023327 mRNA upstream 474618 51940768 ~ 52053880 (+) False XLOC_011772
TCONS_00023324 mRNA upstream 599486 51906053 ~ 51929012 (+) False XLOC_011770
TCONS_00023325 mRNA upstream 603612 51906146 ~ 51924886 (+) True XLOC_011770
TCONS_00023323 mRNA upstream 738750 51764310 ~ 51789748 (+) True XLOC_011768
TCONS_00023334 mRNA downstream 81164 52612866 ~ 52631314 (+) False XLOC_011780
TCONS_00023333 mRNA downstream 81164 52612866 ~ 52631314 (+) False XLOC_011780
TCONS_00023335 mRNA downstream 81164 52612866 ~ 52643968 (+) False XLOC_011780
TCONS_00023336 mRNA downstream 81195 52612897 ~ 52630131 (+) False XLOC_011780
TCONS_00023338 mRNA downstream 290720 52822422 ~ 52840404 (+) False XLOC_011784
TCONS_00023326 other upstream 620312 51908071 ~ 51908186 (+) True XLOC_011771
TCONS_00023279 other upstream 3017498 49510866 ~ 49511000 (+) True XLOC_011737
TCONS_00023246 other upstream 5136864 47391517 ~ 47391634 (+) True XLOC_011719
TCONS_00023244 other upstream 5330506 47197876 ~ 47197992 (+) True XLOC_011717
TCONS_00023235 other upstream 5679152 46849249 ~ 46849346 (+) True XLOC_011710
TCONS_00023332 other downstream 2864 52534566 ~ 52552933 (+) True XLOC_011778
TCONS_00023337 other downstream 93145 52624847 ~ 52630072 (+) True XLOC_011780
TCONS_00023367 other downstream 899570 53431272 ~ 53444454 (+) False XLOC_011802

Expression Profile

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