RNA id: TCONS_00023337


Basic Information

Item Value
RNA id TCONS_00023337
length 798
RNA type nonsense_mediated_decay
GC content 0.50
exon number 5
gene id XLOC_011780
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 52612866 ~ 52643968 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAGGAGAGGAGACGTGAAGCTGGCCCAGCTCGCCATCATGTTCGCCGAGATCCACAGCGTGATGCAGAAATGCAGGAGTGAAGGGAAAAGCTGCGAGCTGATTCTGTGCGGAGACTTCAATGCTGTACCCAGGAGTCCTCTGTGGACGCTGATCACCACCGGGGAGCTCTACTACCACGGCCTACCGACATGGATGatggTAAACAGCAGTACAGTCATGAGTTCATGTGTCAGCTGCGCTTCTGTGAGGCGGCGTGTGTTCGGCCTGCAGATCTAGAGCTCATACCCGGAGTCACAGACAAAACACCCGACCTAAGAGACATGTTTAGTCTAAGGTTCAGTCCTTCTTTACGTCACAGGTTGAGTCTGACGTCTGCTTACAGTCATATTCATCCCGAAACTCTGACTGACCTGGTCACGACACTGAACTCTGAAGGAGCTGCCATGGTCGACTACATCTTCTACTCCCAACGGCAGAAGAGCGGCTTCAACGGAGGCGGAGAGAGCGCTGGTGGTCTGAAACTGCTGGCTCGTCTGTCTCTGCTGTCTGAAGCTCATCTCTGGTCTCTGCGAGGTTTACCCGATGAAAGCTTCCCCTCTGATCATCTCAGCCTGCTGGTCAAACTTCAGCTCAGCTCAGCGGATATATGACCACGCTAGCACTCgtcttctttattattttaactgCCTTTGTATTGTAAATCGCACAAAGAAATTCAGTTTTGGTCAGATCAGTATTTTGTTGTGTATTCAGAATtttcagtgtatgtgtgtttattacAATCTACCATGTGAGG

Function

GO:

id name namespace
GO:0000175 3'-5'-exoribonuclease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111020-12 Predicted to enable 3'-5'-exoribonuclease activity. Is expressed in female organism. Orthologous to human ANGEL1 (angel homolog 1).

Ensembl:

ensembl_id ENSDART00000154868

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024792 lncRNA upstream 33999 52581043 ~ 52590848 (+) True XLOC_011779
TCONS_00024791 lncRNA upstream 42057 52553704 ~ 52582790 (+) False XLOC_011779
TCONS_00024790 lncRNA upstream 71914 52524355 ~ 52552933 (+) False XLOC_011778
TCONS_00024509 lncRNA upstream 150756 52473758 ~ 52474091 (+) True XLOC_011777
TCONS_00024508 lncRNA upstream 352330 52271297 ~ 52272517 (+) True XLOC_011775
TCONS_00024793 lncRNA downstream 27967 52658039 ~ 52662430 (+) False XLOC_011781
TCONS_00024794 lncRNA downstream 28562 52658634 ~ 52660087 (+) True XLOC_011781
TCONS_00024795 lncRNA downstream 38902 52668974 ~ 52671734 (+) False XLOC_011782
TCONS_00024796 lncRNA downstream 38908 52668980 ~ 52671734 (+) False XLOC_011782
TCONS_00024510 lncRNA downstream 38958 52669030 ~ 52669417 (+) True XLOC_011782
TCONS_00023330 mRNA upstream 71400 52524452 ~ 52553447 (+) False XLOC_011778
TCONS_00023328 mRNA upstream 238329 52300018 ~ 52386518 (+) True XLOC_011776
TCONS_00023327 mRNA upstream 570967 51940768 ~ 52053880 (+) False XLOC_011772
TCONS_00023324 mRNA upstream 695835 51906053 ~ 51929012 (+) False XLOC_011770
TCONS_00023325 mRNA upstream 699961 51906146 ~ 51924886 (+) True XLOC_011770
TCONS_00023338 mRNA downstream 192350 52822422 ~ 52840404 (+) False XLOC_011784
TCONS_00023339 mRNA downstream 192350 52822422 ~ 52921234 (+) False XLOC_011784
TCONS_00023340 mRNA downstream 192759 52822831 ~ 52921236 (+) False XLOC_011784
TCONS_00023341 mRNA downstream 192943 52823015 ~ 52824723 (+) False XLOC_011784
TCONS_00023342 mRNA downstream 193066 52823138 ~ 52915741 (+) False XLOC_011784
TCONS_00023332 other upstream 71914 52534566 ~ 52552933 (+) True XLOC_011778
TCONS_00023329 other upstream 87411 52524355 ~ 52537436 (+) False XLOC_011778
TCONS_00023331 other upstream 93145 52528498 ~ 52531702 (+) False XLOC_011778
TCONS_00023326 other upstream 716661 51908071 ~ 51908186 (+) True XLOC_011771
TCONS_00023279 other upstream 3113847 49510866 ~ 49511000 (+) True XLOC_011737
TCONS_00023367 other downstream 801200 53431272 ~ 53444454 (+) False XLOC_011802

Expression Profile

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