Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00023965 |
| length | 963 |
| lncRNA type | retained_intron |
| GC content | 0.52 |
| exon number | 3 |
| gene id | XLOC_012159 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007128.7 |
| NCBI id | CM002901.2 |
| chromosome length | 53461100 |
| location | 27407918 ~ 27419499 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0060339 | negative regulation of type I interferon-mediated signaling pathway | biological_process |
| GO:1902036 | regulation of hematopoietic stem cell differentiation | biological_process |
| GO:0045746 | negative regulation of Notch signaling pathway | biological_process |
| GO:0061157 | mRNA destabilization | biological_process |
| GO:0006401 | RNA catabolic process | biological_process |
| GO:0006402 | mRNA catabolic process | biological_process |
| GO:0001556 | oocyte maturation | biological_process |
| GO:0048598 | embryonic morphogenesis | biological_process |
| GO:0071425 | hematopoietic stem cell proliferation | biological_process |
| GO:1903538 | regulation of meiotic cell cycle process involved in oocyte maturation | biological_process |
| GO:0050767 | regulation of neurogenesis | biological_process |
| GO:0045948 | positive regulation of translational initiation | biological_process |
| GO:0098508 | endothelial to hematopoietic transition | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0000932 | P-body | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003729 | mRNA binding | molecular_function |
| GO:1990247 | N6-methyladenosine-containing RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-948 | Enables N6-methyladenosine-containing RNA binding activity. Involved in several processes, including endothelial to hematopoietic transition; mRNA destabilization; and regulation of hematopoietic stem cell differentiation. Acts upstream of or within hematopoietic stem cell proliferation; mRNA catabolic process; and negative regulation of Notch signaling pathway. Predicted to be located in P-body and cytoplasmic stress granule. Predicted to be active in cytoplasm. Orthologous to human YTHDF2 (YTH N6-methyladenosine RNA binding protein 2). |
| ensembl_id | ENSDART00000157369 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00024912 | lncRNA | downstream | 10913 | 27402643 ~ 27403751 (-) | True | XLOC_012158 |
| TCONS_00023948 | lncRNA | downstream | 428905 | 26982035 ~ 26985759 (-) | True | XLOC_012152 |
| TCONS_00024911 | lncRNA | downstream | 446323 | 26950412 ~ 26968341 (-) | True | XLOC_012151 |
| TCONS_00024910 | lncRNA | downstream | 611928 | 26800971 ~ 26802736 (-) | True | XLOC_012147 |
| TCONS_00023941 | lncRNA | downstream | 612920 | 26783926 ~ 26801744 (-) | False | XLOC_012147 |
| TCONS_00023974 | lncRNA | upstream | 680446 | 28099707 ~ 28101972 (-) | False | XLOC_012161 |
| TCONS_00023975 | lncRNA | upstream | 680446 | 28099707 ~ 28101975 (-) | True | XLOC_012161 |
| TCONS_00023980 | lncRNA | upstream | 1224197 | 28643458 ~ 28652512 (-) | True | XLOC_012166 |
| TCONS_00023986 | lncRNA | upstream | 1327372 | 28746633 ~ 28748380 (-) | True | XLOC_012168 |
| TCONS_00024913 | lncRNA | upstream | 1502311 | 28921572 ~ 29022478 (-) | False | XLOC_012172 |
| TCONS_00023959 | mRNA | downstream | 31796 | 27314088 ~ 27382868 (-) | False | XLOC_012157 |
| TCONS_00023960 | mRNA | downstream | 31796 | 27335543 ~ 27382868 (-) | False | XLOC_012157 |
| TCONS_00023962 | mRNA | downstream | 31821 | 27361352 ~ 27382843 (-) | True | XLOC_012157 |
| TCONS_00023961 | mRNA | downstream | 31838 | 27338540 ~ 27382826 (-) | False | XLOC_012157 |
| TCONS_00023958 | mRNA | downstream | 141368 | 27271399 ~ 27273296 (-) | True | XLOC_012156 |
| TCONS_00023966 | mRNA | upstream | 551883 | 27971144 ~ 27976031 (-) | False | XLOC_012160 |
| TCONS_00023967 | mRNA | upstream | 551949 | 27971210 ~ 27972307 (-) | True | XLOC_012160 |
| TCONS_00023968 | mRNA | upstream | 663180 | 28082441 ~ 28100741 (-) | False | XLOC_012161 |
| TCONS_00023969 | mRNA | upstream | 665131 | 28084392 ~ 28101989 (-) | False | XLOC_012161 |
| TCONS_00023970 | mRNA | upstream | 676065 | 28095326 ~ 28097760 (-) | False | XLOC_012161 |
| TCONS_00023956 | other | downstream | 179198 | 27214891 ~ 27235466 (-) | True | XLOC_012154 |
| TCONS_00023954 | other | downstream | 208858 | 27203121 ~ 27205806 (-) | False | XLOC_012154 |
| TCONS_00023944 | other | downstream | 540624 | 26867691 ~ 26874040 (-) | True | XLOC_012148 |
| TCONS_00023940 | other | downstream | 693670 | 26716160 ~ 26720994 (-) | True | XLOC_012146 |
| TCONS_00023928 | other | downstream | 1550245 | 25864305 ~ 25864419 (-) | True | XLOC_012140 |
| TCONS_00023977 | other | upstream | 1111206 | 28530467 ~ 28530582 (-) | True | XLOC_012163 |
| TCONS_00023979 | other | upstream | 1204787 | 28624048 ~ 28624176 (-) | True | XLOC_012165 |
| TCONS_00023990 | other | upstream | 1390443 | 28809704 ~ 28811638 (-) | True | XLOC_012171 |
| TCONS_00023997 | other | upstream | 1797106 | 29216367 ~ 29224911 (-) | True | XLOC_012176 |
| TCONS_00024000 | other | upstream | 1853702 | 29272963 ~ 29273081 (-) | True | XLOC_012179 |
