RNA id: TCONS_00023966


Basic Information

Item Value
RNA id TCONS_00023966
length 1305
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_012160
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 27971144 ~ 27976031 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agagagagctgaaggCGTGAAAGAAAGAGGTGTAACTGCGTTTCAGATACGACGAAGAGTTGAAAGTTTCTAAAAGAGCAGCGCGAGCAGCACCTTCACTCACTGGCATTTATAAGTCTGCTTTCTTTGCAGATAGCCAGGATGGAAAACATGTCGTCTACTAAATGGACCGAAAATACCAACGACACTGAAATCATCGATTCAAGGTTCCGTTACACTCTCTTTCCCATTTTCTATGGTGTGGTCTTCGTCTTGGGGTTGATAGCCAACTGCTATGCTCTCTATGTGCTTCACCGCATGCGGGAGTCTAAAGCCATGAATGAGATTCGGATCTACATGACCAACTTGACTGTCGCAGACCTGTTGTTTGTGTCTGCTCTACCGTTCTGGATTGACTACTACATGCATGAAGGTCACTGGAGATCCACAGAAGCCTTCTGTCGTATCACAGgcacatttttctttattaacaCCTATGGCTCTATTCTATTCCTCACTGTCATCAGCATTAACCGTTACTGGGCTGTTACCAAACCCCTAAAGGCAGCCTCTTCTGACTGCTGGAAACGTGGAGCGATCATCTCAGTGCTCATCTGGGCTTTCATCCTTTCAGCATCGATTCCTCAACTTACTAAAGAGGGAATTCAGAAGGAACAAAGAATGAACAGGTCCATGCAACGCTGTTTTGAGGGTTACCACTACACAGATGAAAATACAAAAAACGTATTGGTCATCACTCACTTCAGCATTATTGGCTTGTTCTTCCTTGTTTTCTTAATGGTGATTATCTGCAACATCTCCATCGCTCGAGCTCTTCTGTCTCAACCCATCAGTCAGCCTCGAGCCAGCACAGGACGACGTCCTGGCGGGACCAAACGAAGAGCTTTGAGGATGTTGTGTGCCGTCATTGGCGTGTTTGTAATCTGTTTCCTACCCCATCATGTGGTGCAAGGTCCCTGGGTTTTGTCAGTGCTGCAACTGAAGAAGTATTGGTCCACATGGACTCACCAAACCTTAAACGATGCCCATCAGATCACCCTCATGCTTATGGGGATCAACTGTCTCCTAGACCCATTGGTGTATTGCTTCGCTACCACAAAATTTCGCAAGTACCTCGAAAATCATTTCACAAAGATGAAGAATAGGAAAAACTGCTCACGTTACACGTTAAGCACAGGTATATCACTGAAGAGTAGACATCAGAGCATTGTCAATGCTGTAGATGAAGAGAAAGCATAGCTGGGAaataccaaagactatagaatacacaagacatgtcactcgtatctttttgaatggggaaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004992 platelet activating factor receptor activity molecular_function
GO:0045028 G protein-coupled purinergic nucleotide receptor activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko05150 Staphylococcus aureus infection
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-131127-236 Predicted to enable G protein-coupled purinergic nucleotide receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within chemotaxis and signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human PTAFR (platelet activating factor receptor).

Ensembl:

ensembl_id ENSDART00000154829

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023965 lncRNA downstream 551883 27414664 ~ 27419261 (-) True XLOC_012159
TCONS_00024912 lncRNA downstream 567393 27402643 ~ 27403751 (-) True XLOC_012158
TCONS_00023948 lncRNA downstream 985385 26982035 ~ 26985759 (-) True XLOC_012152
TCONS_00024911 lncRNA downstream 1002803 26950412 ~ 26968341 (-) True XLOC_012151
TCONS_00024910 lncRNA downstream 1168408 26800971 ~ 26802736 (-) True XLOC_012147
TCONS_00023974 lncRNA upstream 123676 28099707 ~ 28101972 (-) False XLOC_012161
TCONS_00023975 lncRNA upstream 123676 28099707 ~ 28101975 (-) True XLOC_012161
TCONS_00023980 lncRNA upstream 667427 28643458 ~ 28652512 (-) True XLOC_012166
TCONS_00023986 lncRNA upstream 770602 28746633 ~ 28748380 (-) True XLOC_012168
TCONS_00024913 lncRNA upstream 945541 28921572 ~ 29022478 (-) False XLOC_012172
TCONS_00023964 mRNA downstream 551645 27408889 ~ 27419499 (-) False XLOC_012159
TCONS_00023963 mRNA downstream 551825 27407918 ~ 27419319 (-) False XLOC_012159
TCONS_00023959 mRNA downstream 588276 27314088 ~ 27382868 (-) False XLOC_012157
TCONS_00023960 mRNA downstream 588276 27335543 ~ 27382868 (-) False XLOC_012157
TCONS_00023962 mRNA downstream 588301 27361352 ~ 27382843 (-) True XLOC_012157
TCONS_00023968 mRNA upstream 106410 28082441 ~ 28100741 (-) False XLOC_012161
TCONS_00023969 mRNA upstream 108361 28084392 ~ 28101989 (-) False XLOC_012161
TCONS_00023970 mRNA upstream 119295 28095326 ~ 28097760 (-) False XLOC_012161
TCONS_00023971 mRNA upstream 121326 28097357 ~ 28101975 (-) False XLOC_012161
TCONS_00023972 mRNA upstream 121675 28097706 ~ 28100501 (-) False XLOC_012161
TCONS_00023956 other downstream 735678 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023954 other downstream 765338 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023944 other downstream 1097104 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023940 other downstream 1250150 26716160 ~ 26720994 (-) True XLOC_012146
TCONS_00023928 other downstream 2106725 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023977 other upstream 554436 28530467 ~ 28530582 (-) True XLOC_012163
TCONS_00023979 other upstream 648017 28624048 ~ 28624176 (-) True XLOC_012165
TCONS_00023990 other upstream 833673 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00023997 other upstream 1240336 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00024000 other upstream 1296932 29272963 ~ 29273081 (-) True XLOC_012179

Expression Profile

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