RNA id: TCONS_00023973


Basic Information

Item Value
RNA id TCONS_00023973
length 500
RNA type mRNA
GC content 0.49
exon number 3
gene id XLOC_012161
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 28082441 ~ 28101989 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAAATGAGATTAACGCATACCAGTTacaaacatttagtatgatttacacTAAAATTAGCAAAGAGGAgcttgaatgttttaaataacGAGAAGCCTCTGTCATCTGTGATGTTGTCCAATAAGAAGTCAGACCCAGGCTCCTCCTCTTCGTCAGGGGGTAATGGTGGTGATCGTGCTCCTGAAACCCTTGCTGCCCCTCAGGCTGGTCCAGCGGGTCCCTCTGGCCCGATTTCAGCAGatgtgaaaaagaaagaaagagcctCCCCAAGTGGAGAACCAGGTGGACCCCCTCTGCCGCACCCTCCTGGACCAGGAGGCATTGATCAAGACTCTGCAGAGGGTCGTAGAACTAGTCGACGTAAACGGGCAAAGGTGGAGTACAGGGAGATGGATGAAAGTCTCGCTAATCTTTCGGAGGATGAATATTACTCTGAGGAGGAGAGGAATGCTAAAGCTGAGAAAGAACGCAAGCAGGTGATTCCTCCACCAGCACCACCA

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0034720 histone H3-K4 demethylation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:1903706 regulation of hemopoiesis biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0007399 nervous system development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0034648 histone demethylase activity (H3-dimethyl-K4 specific) molecular_function

KEGG:

id description
ko04714 Thermogenesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-7828 Predicted to enable chromatin binding activity; flavin adenine dinucleotide binding activity; and histone demethylase activity (H3-dimethyl-K4 specific). Acts upstream of or within nervous system development; regulation of hemopoiesis; and regulation of retinoic acid biosynthetic process. Predicted to be located in nucleus. Is expressed in brain; head; intestine; and spinal cord. Orthologous to human KDM1A (lysine demethylase 1A).

Ensembl:

ensembl_id ENSDART00000149458

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023965 lncRNA downstream 680102 27414664 ~ 27419261 (-) True XLOC_012159
TCONS_00024912 lncRNA downstream 695612 27402643 ~ 27403751 (-) True XLOC_012158
TCONS_00023948 lncRNA downstream 1113604 26982035 ~ 26985759 (-) True XLOC_012152
TCONS_00024911 lncRNA downstream 1131022 26950412 ~ 26968341 (-) True XLOC_012151
TCONS_00024910 lncRNA downstream 1296627 26800971 ~ 26802736 (-) True XLOC_012147
TCONS_00023980 lncRNA upstream 541578 28643458 ~ 28652512 (-) True XLOC_012166
TCONS_00023986 lncRNA upstream 644753 28746633 ~ 28748380 (-) True XLOC_012168
TCONS_00024913 lncRNA upstream 819692 28921572 ~ 29022478 (-) False XLOC_012172
TCONS_00024914 lncRNA upstream 819692 28921572 ~ 29022679 (-) False XLOC_012172
TCONS_00024915 lncRNA upstream 842701 28944581 ~ 28954033 (-) False XLOC_012172
TCONS_00023970 mRNA downstream 1603 28095326 ~ 28097760 (-) False XLOC_012161
TCONS_00023966 mRNA downstream 123332 27971144 ~ 27976031 (-) False XLOC_012160
TCONS_00023967 mRNA downstream 127056 27971210 ~ 27972307 (-) True XLOC_012160
TCONS_00023964 mRNA downstream 679864 27408889 ~ 27419499 (-) False XLOC_012159
TCONS_00023963 mRNA downstream 680044 27407918 ~ 27419319 (-) False XLOC_012159
TCONS_00023976 mRNA upstream 64979 28166859 ~ 28198099 (-) True XLOC_012162
TCONS_00023978 mRNA upstream 505537 28607417 ~ 28612851 (-) True XLOC_012164
TCONS_00023981 mRNA upstream 602091 28703971 ~ 28707898 (-) False XLOC_012167
TCONS_00023982 mRNA upstream 602319 28704199 ~ 28707970 (-) False XLOC_012167
TCONS_00023984 mRNA upstream 602391 28704271 ~ 28705264 (-) False XLOC_012167
TCONS_00023956 other downstream 863897 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023954 other downstream 893557 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023944 other downstream 1225323 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023940 other downstream 1378369 26716160 ~ 26720994 (-) True XLOC_012146
TCONS_00023928 other downstream 2234944 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023977 other upstream 428587 28530467 ~ 28530582 (-) True XLOC_012163
TCONS_00023979 other upstream 522168 28624048 ~ 28624176 (-) True XLOC_012165
TCONS_00023990 other upstream 707824 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00023997 other upstream 1114487 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00024000 other upstream 1171083 29272963 ~ 29273081 (-) True XLOC_012179