RNA id: TCONS_00023984


Basic Information

Item Value
RNA id TCONS_00023984
length 435
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_012167
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 28703971 ~ 28707970 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATCAAGTTCCTGCTGATGGTGAACAAACAGGGGCAGACTCGCCTCTCTAAGTATTATGAAGCAGTGGATCTTGGGAAGAGAGCAGCTCTGGAGGCTGACGTGGTGCGTGGATGTCTGGCCCGGAGGAAGGAAGAGtgctcatttgtagagTATAAGGACTATAAACTGGTCTATCGCCAATATGCAGCTCTTTTCATTGTTGTTGGCGTCACTGAAAATGAGAATGAACTCTCTATCTATGAACTTGTGCACAACTTTGTGGAGGTGCTAGACAAATATTTCAGTCGTGTGAGTGAGCTGGATATCATGTTTAATTTAGACAAAGTACACATTATTCTTGATGAAATGATCCTGAACGGACACATCGTGGAGACCAATAAGAACAGAATACTGGCACCACTACTGGCCCTGGACAAGATGACTGAAAGCTGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko04142 Lysosome
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030616-404 Involved in central nervous system neuron axonogenesis. Predicted to be located in membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in central nervous system. Used to study hereditary spastic paraplegia 52. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 52. Orthologous to human AP4S1 (adaptor related protein complex 4 subunit sigma 1).

Ensembl:

ensembl_id ENSDART00000189874

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023980 lncRNA downstream 51759 28643458 ~ 28652512 (-) True XLOC_012166
TCONS_00023975 lncRNA downstream 602296 28099707 ~ 28101975 (-) True XLOC_012161
TCONS_00023974 lncRNA downstream 602299 28099707 ~ 28101972 (-) False XLOC_012161
TCONS_00023965 lncRNA downstream 1285010 27414664 ~ 27419261 (-) True XLOC_012159
TCONS_00024912 lncRNA downstream 1300520 27402643 ~ 27403751 (-) True XLOC_012158
TCONS_00023986 lncRNA upstream 41369 28746633 ~ 28748380 (-) True XLOC_012168
TCONS_00024913 lncRNA upstream 216308 28921572 ~ 29022478 (-) False XLOC_012172
TCONS_00024914 lncRNA upstream 216308 28921572 ~ 29022679 (-) False XLOC_012172
TCONS_00024915 lncRNA upstream 239317 28944581 ~ 28954033 (-) False XLOC_012172
TCONS_00024916 lncRNA upstream 239317 28944581 ~ 29022499 (-) False XLOC_012172
TCONS_00023978 mRNA downstream 91420 28607417 ~ 28612851 (-) True XLOC_012164
TCONS_00023976 mRNA downstream 506172 28166859 ~ 28198099 (-) True XLOC_012162
TCONS_00023971 mRNA downstream 602296 28097357 ~ 28101975 (-) False XLOC_012161
TCONS_00023985 mRNA upstream 38397 28743661 ~ 28749640 (-) False XLOC_012168
TCONS_00023987 mRNA upstream 55322 28760586 ~ 28770800 (-) True XLOC_012169
TCONS_00023988 mRNA upstream 65764 28771028 ~ 28797395 (-) True XLOC_012170
TCONS_00023989 mRNA upstream 93461 28798725 ~ 28811747 (-) False XLOC_012171
TCONS_00023992 mRNA upstream 411763 29117027 ~ 29119362 (-) True XLOC_012173
TCONS_00023979 other downstream 80095 28624048 ~ 28624176 (-) True XLOC_012165
TCONS_00023977 other downstream 173689 28530467 ~ 28530582 (-) True XLOC_012163
TCONS_00023956 other downstream 1468805 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023954 other downstream 1498465 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023944 other downstream 1830231 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023990 other upstream 104440 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00023997 other upstream 511103 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00024000 other upstream 567699 29272963 ~ 29273081 (-) True XLOC_012179
TCONS_00024004 other upstream 931941 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024011 other upstream 1471172 30176436 ~ 30204529 (-) False XLOC_012187

Expression Profile

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