RNA id: TCONS_00024031


Basic Information

Item Value
RNA id TCONS_00024031
length 6445
RNA type mRNA
GC content 0.42
exon number 22
gene id XLOC_012200
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30976484 ~ 31082381 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

catTTAGGATAAAATATCTTGAaacaacagtatttttaaaataatgtataatgtcTGAACTTGAATGCACATGTGACACTGTTTCAACAACAACACAAGTCATTGTATTAAACCCACAGTCACAAAAGTCTCTCACGCATTGGCATCCACTGGTAAAAGCAGAGTTGGACCGGCTCATCTGCTTCAAAATAACCAGAGTGCAGCATTTGAATCCAGGAATGGAGTCTCTGAGTGTAACACAGGCCGCTCAGATTAAATGGATCTCCTCCAGAGGCAGGAGGGAGGGTGTGAACATATTTATCCTCCAATAGAGGCCCAGGCCACGAGGGCTCGATATGCATTCTTTGCATCCCATGGTTCTCAGCAGGACAGAAGCCGAGAGGAGTCTGATGGTGTCCGCAATCTCAAAGAGCAACTTGTTTTTTCCTTTCAGATTTTCCCAGAGAGAGATTTTCCACAATGTCAGACTGCGAAGGGCTTCCGATGGATGACAGTGCCTCGGCAACGAGTAGTATGGAGGTGACAGACAGGATCGCCTCTCTGGAGCAAAGGGTTCAGATGCAGGAGGATGAAATTCAGCTGCTAAAGTCAGCGCTGGCTGATGTGGTGAGGAGATTGAACATCTCAGAGGAGCAGCAAGCCATGCTCAACAAGAAAGGACCAACCAAAGCAAGACCAATGATCGCAGCCCTGCCCCTGAGACCCACGGTCAACAACGGTACTGTCCTGCCTAAGAAGGGTGGCACACTGCCATCACCCTCCAACTGCAAGAAGGACAACAACTCACCAGCAACCAGAAGCACTGTGAAGAGAACAAGTTCATCTGAGCATGTCGGTCCAAACAACAGGAAGGACAGTGGTGTGGACTCCAAAAACAACCGCACACGCGCCGGGTCCACTGGGAGCAATTCCAGCGGCAAGAAAACCACAGAAACCAAGCAGAGAGAGCCTGTTTTCAGTGCAGATGAAGGGTATGTCAAAATGTATTTGAAGGGACGACCCATCACCATGTACATGCCCAAAGACCTGGTGGATACTTATTGCCTGGAAACTAAAGCTGACTTGCCTCCTAAAAAACTGAAGCTAGACTGGGTTTATGGTTACCGGGGCCGCGACTGTCGATCCAACCTGTACTTGCTCCCGACGGGGGAAACGGTTTACTTCATTGCATCTGTGGTGGTGCTGTATAATGTGGATGAGCAACTGCAAAGACACTACACTGGACATACTGATGATATCAAGTGCCTCGCTGTCCATCCTGATAAAATCACCATAGCAACAGGACAAGTGGCTGGCACATCCTCAGATGGAAAACAGTTGGCTCCTCATGTGCGCGTGTGGGACTCTGTGAGTTTGAACACTTTGCACATCCTCGGAAACGGTTTCTTTGATCGAGCGCTGGTCTGTCTCTCCTTCTCAAAATCGAACGGTGGAAGCTGGTTGTGTGTTGTGGATGACTCCAATGACCACATGCTCTCTGTGTGGGACTGGCAGAGGGAAGACAGACTCGCTGAAGTCAAGTGCTCCAATGAGTCAGTGTTTGCTGCTGATTTCCACCCGACAGATGCTAATATAATTGTAACATGTGGGAAATCACATCTGTGCTTCTGGTCATTAGAAAAGGGGTCTCTTGTGAAAAAGCAGGGTCTTTTTGAGAAACAAGAGAAGCCCAAGTTTGTATTGTGTGTGACTTTTTCAGAAAATGGCGACGCCATCACTGGAGACTCGAGTGGAAATATACTTGTGTGGGGCAAagGGTCTAACCGTATTAGCTTGGCCATTCAGGGAGCACATGAAGCCAGCGTTTTTGCACTTTGCATGTTGAGAAATGGGACGTTGGTCTCGGGTGGGAAGGATCGTAAACTCATATCATGGGATGAAAATTTTCAGAAGATTCAAACAGTGGagGTGCCAGAGTTATATGGCCCTGTTCGCACTGTGGCTGAGGGACGGGGAGAAACGGTTCTTATTGGCACCACCAAAAACTATGTCCTACAAGGCAGTCTGAATGGAGAGTTCATACCCATTACCCAGGGCCACACAGATGAGTTATGGGGCCTTACTATCCATCCTCTGAAGCACCAGTTCCTCACCTGTGGCCATGACAAACACATCTACCTGTGGGACTCAGACTCCCATCAGCCGATCTGGACCAAAACACTAGAGGACTCAGCTCAGTCGGCTGGATTTCACCCCTCTGGGGCGACGGTGGCTGTAGGAATGCAGACAGGCAGGTGGCTGGTGCTCGATACTGAATCGAAGGATCTCGTCACGGTTCACACGGATGGGAATGAACAGCTGTCTGTGATCCGCTTTTCTCCGGATGGTAATTTCCTCGCAATAGGGTCTCACGACAACTACATCTACATTTATGCTGTGGCAGAAAATGGCAAGAAATACAGCAGAGTTGGAAAGTGCTCAGGTCATTCAAGTTTCATCACCCATCTGGATTGGTCTGTGGATTCTCAGTACTTGGTATCCAACTCAGGGGACTATGAGATCCTGTACTGGATTCCCTCTGTGTGTAAGCAAGTTGTGAGTGTGGAAACCACTCGGGATATTGAATGGGCCACTTTCACTTGTACTCTGGGCTTCCATGTTTTTGGATTGTGGCCAGATGGCTCAGACGGTACCGACATCAATGCTGTGTGCAGTTCATATGCAAAGAGACTGCTGGTGACTGGAGACGACTTTGGCAAAGTTCACCTCTTTTCATTCCCCTGCTCTCAGTCCAGGGCGCCTAGTCACATCTACAGTGGACATAGCAGCCACGTCACCAATGTTAACTTCCTGTTTGACGACAGCCACTTAGTCTCCACCGGAGGAAAGGACATGAGTATAATGCAATGGCGTGTGGTGTAACATGACCACCACCACATTGAACTTTCTTGATTTTCTGGGAACAAGTGGCTTGGCAAAGCTAAAGCGGGGCCATTGACTACAGACTAAAGTGGAGTCTCAGTTTTATTCGCCTTTAATTGTTATCTCAGGACACCGATATTTGAAGTGACTCTGTTTTGACTGTCTCACCCACTCCCTAGGCTGTTAAAGAGATGGATTAGGAGGAAAACCCTTCTCTTTTGCTTTGAATAACCAACTAAAATAGCCGATCTAATGGACAAATGTGATGCCAAAGCACATGAAGGAACATATTAGGAACAATTTGTCCAAGTTCAGTATATGATCAAAGCACTGACCAATCCTAACACTGTAACATCTATTAACAGTATCAAAAGACCTGTGTTTTAAACAATTGCACGTTAaacattgttttatactgaaatcTCTCTCccttatcttattattattatttagcttttgCTGCCACCGGCTGGTAAGTAAGGGGACTGCAGCTACCTTCCCGcgttttaaaggggtggttcacccAAATTCcccactatttactcaccctcaagttgttataaacctttataagtttctttcttctgttggacacaaaacaagatattttgacgaAAGCTAAAACCTGCAATCATTACAAACCTATAATACGGAAGTCAATGTTTCCAGGTCTCCAGCTTTCTTCAGGATATCTTCGTTTGTGTTTAGGAAAGGGAAggaaagggagagtaaatgatgacggaaTTGTCCTTTGATTATTTAATACATGTtattgttttctctatttaaattaatagaaataaaaataatacttaatcAGCCATCAAGGATGAAAAAGTGACTGTACTGCAGATTAAGACCATTGATCACTGGTTTAGTTCAATCCTCACTCTGTTATTTGCATCAACTAGCTTAACTTGAACGTCATAATGTAGTGCACATTTACATTAGAGTTGAGCTCCATTTTCATAACCTCTGCTTGGGAAACAGGATGGAACCGTTACCACCAAATGACTGTAGTATTAATAAAACTAAGCATGCACGAGTTTGTCACTGTCTAACCTAATTTTGTTTTTCCATATTCGCTGTCAGATGTGTggcaaaataaagaaaactttgTTTAGTTCTTCTGTTAAATATGAGCTTGTTTTTGACTGGATTGTTGGATAAAAGTTGGATGGAAAGTGTAAAAGATAATGGAAGCACCAGCAGAATTTGAAGCCTATTACAAAACCACAGTATATGAATCAGTGGTGAGGCTACAAAAAGGCAACGATAGCACTGACTCTGTCACTCTATGGCAGATCatttagacattcattcattttcttttggctcagtccctttattaatcaggggttgccacagcgaaatgaaccgccaacttatccagcatatgtttttcacacaGCGAAtgacctttcagctgcaactcatcactgggaaacacccatacactctcagtcacacacatacatacactacggacaatgtagctTACCTAaatcacctacagcgcatgtctttggacttgtggggggaactggagcacccggaggaaacccgcaccaacacggggagaacatgcaaacacttcacacagaaataccaactcaTTTCCCATTAGTAAATATTAGGGCTACAACGGTACCCTGAAATCAGGGTTTGATGCATACTTTGGTTTTAGGGTCACAATTTGATACAGCTACAGTacagaaggaaaatgaacaaatccCAGTGCTtgcattttctgtttattttgaactGGCAGAATTGTTTTGTCACAATCAGCTACAGAACTAAAGAGAATCTTGGGATGCAAAAGCACAAAATAAacgcaataataaaaaaataaaaacaggaaaaaaattattgtttattaaacttaTGATTCAATAAGCTTCAAAACTTAAATGTCTTTTAAtgaaaattcaattcagcttttttgtatagcgcttttacaatgtagattatgtcaaagcagcttcacataaatggtcaaagtaactggatcagggtagttcagtttttagtgtttaagttcagttcagtttagctcagttcagtgtgatttaatcattactgagagtccaaacactgaagagcaaattcattgttGCTAGCACCGTGTCCATCCAGAACCGCATGTGCAGTGGATAACAACTGTTCAATATTATGTGTGTGTAGAAACTCACTTACAGACTAAACAGTATCTTATATTCCCATTGTTTTAAGGGATGTGCATGACTGTTATACACTTGCATGTTTTACAGCACTGAGTGTTTTGATGTATTCTTTGTGAATAACTTCTTGGTTGTTGCAGTTGTTACAAATCTATGTGTACTGTACATTGTAAAAAGGATTGCTTCAAATTTTACAGCAACTTATTTACTATTGTAGCAATTTTTATCTTTCTGCTAAGCTatacactccctgacaaaagtcttgtcatcgatcccagatGTAGCAACAAATAagaacttctagttgatcatttggaaaagtggcagaaagtagatttttttgatgaatttgatgaactgcatcccaatcatcacaaacacagcagaagacctattgaaacccgcatggacccaagattctaacacaaatcagtcaggtttggtaaaggaaaaatcatggtttggggttacattcagaatggAGGTAAGCCATAaaaagcctgaggtatcaaggcatttgtgctgcccattacattacaaaccacaggcgAGAGCAAATTCTCAGCAGGTCACCGCTCCTTCCCATACTTCAGCCatcacatcaaagatcctgaaagaaggtcaaggtgctcctggattggccagcccagccaccagttatgaacattattaagcatgtctgtagtgagatgaagaaggaggcattgaagatgaatccagagaatcttgatgaactctgggagtattttcagatgattttattaataagttatttaagtcattgcagagatcctctaaggcaggggtgtcaaactcaattcctggagggccgaagccctgcacagtttagttccaaccctgctccaacacacttacctgtaggtttcgaacaagcctgaaggactgaattcgtttgatcaggtgtgtttaattagggttagaactaaactgtgcagagctgtggcccttttggaacAGAGTTTGACTCCTGTGCTCTAAggtcatggaagtcatacacgatattaattctttttccactgcaccatgactttatattctatactctacattatttctgttatgtgACAATACTTCTAtttgagcaaagtcagaccttactgtcctaattaaatattcaataaatatattatttatcctaatttttttaaaaaatcaacgcATGATCTATCTTATTTTGGTCAAAAAAATGTCTTCTgataccaattgatcaactagaagtcaagttatttgttgttcctaaaacttggataggtgacaagacttttgacaggtagtgtacATATGTTTTAGACATATTTTGACTCTTTCAATTTCAGTCTAAATGTGATAATGTTTTTGCGTACCAATATTGTAAAATGTGCTTTAGTTTTACATTAGGC

Function

GO:

id name namespace
GO:0036368 cone photoresponse recovery biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0072686 mitotic spindle cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-156 Predicted to enable microtubule binding activity. Acts upstream of or within cone photoresponse recovery. Predicted to colocalize with mitotic spindle. Is expressed in anterior macula; eye; and retinal cone cell. Human ortholog(s) of this gene implicated in subcortical band heterotopia. Orthologous to human EML1 (EMAP like 1).

Ensembl:

ensembl_id ENSDART00000186930

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024026 lncRNA downstream 74612 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024932 lncRNA downstream 383426 30573572 ~ 30593058 (-) True XLOC_012193
TCONS_00024931 lncRNA downstream 383735 30573572 ~ 30592749 (-) False XLOC_012193
TCONS_00024014 lncRNA downstream 503123 30472411 ~ 30473361 (-) True XLOC_012191
TCONS_00024930 lncRNA downstream 566725 30403302 ~ 30409759 (-) True XLOC_012190
TCONS_00024039 lncRNA upstream 13945 31096326 ~ 31097541 (-) True XLOC_012201
TCONS_00024041 lncRNA upstream 99569 31181950 ~ 31183876 (-) False XLOC_012203
TCONS_00024044 lncRNA upstream 100263 31182644 ~ 31185243 (-) False XLOC_012203
TCONS_00024043 lncRNA upstream 100263 31182644 ~ 31185243 (-) False XLOC_012203
TCONS_00024042 lncRNA upstream 100263 31182644 ~ 31185243 (-) True XLOC_012203
TCONS_00024024 mRNA downstream 506 30900491 ~ 30975978 (-) False XLOC_012199
TCONS_00024028 mRNA downstream 777 30911642 ~ 30975707 (-) True XLOC_012199
TCONS_00024023 mRNA downstream 31918 30897292 ~ 30944566 (-) False XLOC_012199
TCONS_00024022 mRNA downstream 113232 30857008 ~ 30863252 (-) True XLOC_012198
TCONS_00024021 mRNA downstream 137146 30835076 ~ 30839338 (-) True XLOC_012197
TCONS_00024040 mRNA upstream 68834 31151215 ~ 31164219 (-) True XLOC_012202
TCONS_00024045 mRNA upstream 122683 31205064 ~ 31212420 (-) True XLOC_012204
TCONS_00024046 mRNA upstream 131786 31214167 ~ 31220070 (-) False XLOC_012205
TCONS_00024047 mRNA upstream 131809 31214190 ~ 31221774 (-) False XLOC_012205
TCONS_00024048 mRNA upstream 132324 31214705 ~ 31221655 (-) False XLOC_012205
TCONS_00024027 other downstream 64862 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024025 other downstream 74612 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024018 other downstream 341189 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024011 other downstream 771955 30176436 ~ 30204529 (-) False XLOC_012187
TCONS_00024004 other downstream 1339163 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024055 other upstream 269814 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024057 other upstream 302053 31384434 ~ 31384548 (-) True XLOC_012208
TCONS_00024073 other upstream 1163748 32246129 ~ 32246255 (-) True XLOC_012219
TCONS_00024076 other upstream 1308675 32391056 ~ 32401688 (-) False XLOC_012221
TCONS_00024082 other upstream 1341053 32423434 ~ 32426104 (-) True XLOC_012221

Expression Profile

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