RNA id: TCONS_00024054


Basic Information

Item Value
RNA id TCONS_00024054
length 575
lncRNA type retained_intron
GC content 0.43
exon number 3
gene id XLOC_012207
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31346560 ~ 31360956 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAATGAGAGGATCCAGCACTTGTGAACTCGTCTTTGAAGACTGCAAGATTCCTGGTGTGTTAGTCTTCATGCATATTGGTGAGGCTAAATATGTCTCAGGCTCCAAACTTAATCTGAAAACGTTTTGTTGTGGTTTCAGAGGAAAATGTATTGGGCCCTTTAAATAAAGGAGTCTATGTTTTGATGAGTGGTTTGGACCTGGAAAGACTCGTCCTGGCTTCTGGACCTGTTGGgtaatttttgttgtgtttatttccAGTAGCATTTCCAGTTGTAGTTGTTTGTTTGATGACTTTACACATTCCCTCAGCATCATGCAAGCTGTGCTTGATCATGCAATTCCTTATCTACATGTTCGCGAAGCTTTTGGACAGAAAATTGGCCACTTTCAGCTGATGCAAGGAAAAATGGCTGACATGTACACACGCCTTAGTTCCTGTCGACAGTATTTATACAACGTTGCTCGTGCTTGTGACAAAGGCCATTTCAGTGCTAAGGACTGTGCTGGGGTAATCCTTTATTGTGCTGAGAATGCAACTCAAGTTGCCTTGGATGGGATTCAATGCCTGGGTG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008470 isovaleryl-CoA dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
ko00280 Valine, leucine and isoleucine degradation

ZFIN:

id description
ZDB-GENE-030616-262 Predicted to enable isovaleryl-CoA dehydrogenase activity. Predicted to be involved in leucine catabolic process. Is expressed in alar plate midbrain region; digestive system; immature eye; musculature system; and optic tectum. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and isovaleric acidemia. Orthologous to human IVD (isovaleryl-CoA dehydrogenase).

Ensembl:

ensembl_id ENSDART00000133468

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024050 lncRNA downstream 128175 31218882 ~ 31221536 (-) True XLOC_012205
TCONS_00024044 lncRNA downstream 164468 31182644 ~ 31185243 (-) False XLOC_012203
TCONS_00024043 lncRNA downstream 164468 31182644 ~ 31185243 (-) False XLOC_012203
TCONS_00024042 lncRNA downstream 164468 31182644 ~ 31185243 (-) True XLOC_012203
TCONS_00024041 lncRNA downstream 165835 31181950 ~ 31183876 (-) False XLOC_012203
TCONS_00024063 lncRNA upstream 256293 31608540 ~ 31611613 (-) True XLOC_012211
TCONS_00024070 lncRNA upstream 350094 31702341 ~ 31705509 (-) True XLOC_012215
TCONS_00024934 lncRNA upstream 775650 32127897 ~ 32135852 (-) False XLOC_012218
TCONS_00024935 lncRNA upstream 775650 32127897 ~ 32136128 (-) True XLOC_012218
TCONS_00024075 lncRNA upstream 1014859 32367106 ~ 32368787 (-) True XLOC_012220
TCONS_00024051 mRNA downstream 5311 31276437 ~ 31344400 (-) False XLOC_012206
TCONS_00024052 mRNA downstream 41053 31278985 ~ 31308658 (-) True XLOC_012206
TCONS_00024047 mRNA downstream 127937 31214190 ~ 31221774 (-) False XLOC_012205
TCONS_00024049 mRNA downstream 128051 31216878 ~ 31221660 (-) False XLOC_012205
TCONS_00024048 mRNA downstream 128056 31214705 ~ 31221655 (-) False XLOC_012205
TCONS_00024056 mRNA upstream 3269 31355516 ~ 31360956 (-) True XLOC_012207
TCONS_00024058 mRNA upstream 48337 31400584 ~ 31483469 (-) False XLOC_012209
TCONS_00024059 mRNA upstream 48460 31400707 ~ 31483469 (-) True XLOC_012209
TCONS_00024060 mRNA upstream 183517 31535764 ~ 31579733 (-) False XLOC_012210
TCONS_00024061 mRNA upstream 183559 31535806 ~ 31579715 (-) True XLOC_012210
TCONS_00024027 other downstream 438089 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024025 other downstream 447839 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024018 other downstream 714416 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024011 other downstream 1145182 30176436 ~ 30204529 (-) False XLOC_012187
TCONS_00024004 other downstream 1712390 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024057 other upstream 32187 31384434 ~ 31384548 (-) True XLOC_012208
TCONS_00024073 other upstream 893882 32246129 ~ 32246255 (-) True XLOC_012219
TCONS_00024076 other upstream 1038809 32391056 ~ 32401688 (-) False XLOC_012221
TCONS_00024082 other upstream 1071187 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024092 other upstream 1394145 32746392 ~ 32752905 (-) False XLOC_012226

Expression Profile

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