RNA id: TCONS_00024063


Basic Information

Item Value
RNA id TCONS_00024063
length 746
lncRNA type retained_intron
GC content 0.33
exon number 3
gene id XLOC_012211
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31606635 ~ 31611692 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAAATAAAGCAGGTCGGGAGAAATCGCATTGAGGAACTACAGGTCTGGAAAAAACCCTTGTTATGAATTCCTGGGACCCCATTACTTACACAGTGACACCTGCTGCTAAGATTTTAGCCAGATGTGTAGCAGCAGGCACCATGACACAGGAGCTTGATGCTGTGCCACAGGATTCAGAAATCTTCTCCTCATCTTTACTTGAAGCTGAGCAGCTGAACAGAATCAGACAAGATCTTGATCAGGTTAAAAGTCATTTCAGCACTTAATGGAATAGTCTATCCACATTTGAAAATGATGTCATCAACATCCTGCACTTGTTTCAAAcccgtttgagtttctttcttctgctgaacacaaaagaagatattttgaagaatgttggaaactagtaGCCGTTTACatccatagtaatttttttcctactatggatgtcaaaatGTTTCcaggatttttcaaaataacatattttatgttcacCTGATTAgagtttttttaaaagatttttattttttttttttaattctgaaaatttatttttgatttgcaAACCCTCAAAGATcaattcagttcattcaattcaagCTTATTACAACAAGAAGGTTATTGTATTATATGTTATTACATTAGTCAAAAATCCTAATGTTAGGGTGTTGTGTATAGGATGGACCATATGTAGTGTCCTTTTCCAAAAGATGATATCTATGTgtatcatatatattatatatagtttattttatatataat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000135468

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024933 lncRNA downstream 247941 31349711 ~ 31360599 (-) False XLOC_012207
TCONS_00024054 lncRNA downstream 256293 31349711 ~ 31352247 (-) False XLOC_012207
TCONS_00024050 lncRNA downstream 387004 31218882 ~ 31221536 (-) True XLOC_012205
TCONS_00024044 lncRNA downstream 423297 31182644 ~ 31185243 (-) False XLOC_012203
TCONS_00024043 lncRNA downstream 423297 31182644 ~ 31185243 (-) False XLOC_012203
TCONS_00024070 lncRNA upstream 90728 31702341 ~ 31705509 (-) True XLOC_012215
TCONS_00024934 lncRNA upstream 516284 32127897 ~ 32135852 (-) False XLOC_012218
TCONS_00024935 lncRNA upstream 516284 32127897 ~ 32136128 (-) True XLOC_012218
TCONS_00024075 lncRNA upstream 755493 32367106 ~ 32368787 (-) True XLOC_012220
TCONS_00024079 lncRNA upstream 779443 32391056 ~ 32408399 (-) False XLOC_012221
TCONS_00024060 mRNA downstream 28807 31535764 ~ 31579733 (-) False XLOC_012210
TCONS_00024061 mRNA downstream 28825 31535806 ~ 31579715 (-) True XLOC_012210
TCONS_00024058 mRNA downstream 125071 31400584 ~ 31483469 (-) False XLOC_012209
TCONS_00024059 mRNA downstream 125071 31400707 ~ 31483469 (-) True XLOC_012209
TCONS_00024056 mRNA downstream 247584 31355516 ~ 31360956 (-) True XLOC_012207
TCONS_00024064 mRNA upstream 11743 31623356 ~ 31639845 (-) True XLOC_012212
TCONS_00024065 mRNA upstream 41027 31652640 ~ 31659670 (-) True XLOC_012213
TCONS_00024066 mRNA upstream 56012 31667625 ~ 31695257 (-) False XLOC_012214
TCONS_00024067 mRNA upstream 75052 31686665 ~ 31695217 (-) True XLOC_012214
TCONS_00024068 mRNA upstream 85044 31696657 ~ 31712041 (-) False XLOC_012215
TCONS_00024057 other downstream 223992 31384434 ~ 31384548 (-) True XLOC_012208
TCONS_00024055 other downstream 247941 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024027 other downstream 696918 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024025 other downstream 706668 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024018 other downstream 973245 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024073 other upstream 634516 32246129 ~ 32246255 (-) True XLOC_012219
TCONS_00024076 other upstream 779443 32391056 ~ 32401688 (-) False XLOC_012221
TCONS_00024082 other upstream 811821 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024092 other upstream 1134779 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024093 other upstream 1138562 32750175 ~ 32753284 (-) False XLOC_012226

Expression Profile

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