RNA id: TCONS_00024082


Basic Information

Item Value
RNA id TCONS_00024082
length 302
RNA type processed_transcript
GC content 0.49
exon number 2
gene id XLOC_012221
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 32391056 ~ 32426413 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTGCCGTGAGGAGTCAGACTGTCAGCGAGAGCTGATTCCGCTACACAGTTGTGCTGTTCGGTTTCTTCAGTTCACCTGTCATGTTCAGACCTGCTACGGTCGCAGGTGTATCTGCACCTGCTGCGGGAGTTATGAGCGCTGCGCTGAGTTTGTCAGACTTGCGTGATACTTGATTTGTTTTGAatgtttgtttatctgttttgGAGTGAAATCCTATTTGAGGCAAAATGGGAATTGCAGGACTTTCTTTTATAAGCGGGCAGTGCTCGTGCTGCCCAATGATCCTGCGTACAACCAGCG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048839 inner ear development biological_process
GO:0008544 epidermis development biological_process
GO:0002934 desmosome organization biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0090504 epiboly biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3665 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including desmosome organization; epiboly; and inner ear development. Located in cytoplasm. Is expressed in several structures, including epidermal cell; head; integument; pronephric duct; and sensory system. Orthologous to human GRHL1 (grainyhead like transcription factor 1).

Ensembl:

ensembl_id ENSDART00000148378

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024079 lncRNA downstream 15035 32391056 ~ 32408399 (-) False XLOC_012221
TCONS_00024075 lncRNA downstream 54647 32367106 ~ 32368787 (-) True XLOC_012220
TCONS_00024935 lncRNA downstream 287306 32127897 ~ 32136128 (-) True XLOC_012218
TCONS_00024934 lncRNA downstream 287582 32127897 ~ 32135852 (-) False XLOC_012218
TCONS_00024070 lncRNA downstream 717925 31702341 ~ 31705509 (-) True XLOC_012215
TCONS_00024085 lncRNA upstream 205010 32631114 ~ 32635778 (-) True XLOC_012223
TCONS_00024936 lncRNA upstream 320288 32746392 ~ 32753284 (-) False XLOC_012226
TCONS_00024094 lncRNA upstream 337239 32763343 ~ 32779442 (-) False XLOC_012226
TCONS_00024937 lncRNA upstream 707715 33133819 ~ 33138376 (-) True XLOC_012228
TCONS_00024938 lncRNA upstream 719490 33145594 ~ 33162478 (-) True XLOC_012229
TCONS_00024080 mRNA downstream 10287 32396388 ~ 32413147 (-) False XLOC_012221
TCONS_00024074 mRNA downstream 53387 32365941 ~ 32370047 (-) False XLOC_012220
TCONS_00024072 mRNA downstream 603597 31805775 ~ 31819837 (-) True XLOC_012217
TCONS_00024071 mRNA downstream 704363 31717192 ~ 31719071 (-) True XLOC_012216
TCONS_00024068 mRNA downstream 711393 31696657 ~ 31712041 (-) False XLOC_012215
TCONS_00024083 mRNA upstream 181906 32608010 ~ 32621103 (-) True XLOC_012222
TCONS_00024084 mRNA upstream 204685 32630789 ~ 32636533 (-) False XLOC_012223
TCONS_00024086 mRNA upstream 231098 32657202 ~ 32698517 (-) False XLOC_012224
TCONS_00024087 mRNA upstream 235938 32662042 ~ 32698503 (-) True XLOC_012224
TCONS_00024089 mRNA upstream 294309 32720413 ~ 32743249 (-) False XLOC_012225
TCONS_00024076 other downstream 21746 32391056 ~ 32401688 (-) False XLOC_012221
TCONS_00024073 other downstream 177179 32246129 ~ 32246255 (-) True XLOC_012219
TCONS_00024057 other downstream 1038886 31384434 ~ 31384548 (-) True XLOC_012208
TCONS_00024055 other downstream 1062835 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024027 other downstream 1511812 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024092 other upstream 320288 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024093 other upstream 324071 32750175 ~ 32753284 (-) False XLOC_012226
TCONS_00024095 other upstream 348813 32774917 ~ 32779442 (-) True XLOC_012226
TCONS_00024101 other upstream 812213 33238317 ~ 33239286 (-) True XLOC_012231
TCONS_00024113 other upstream 1265594 33691698 ~ 33705464 (-) False XLOC_012236

Expression Profile

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