RNA id: TCONS_00024102


Basic Information

Item Value
RNA id TCONS_00024102
length 3527
RNA type mRNA
GC content 0.42
exon number 20
gene id XLOC_012232
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33388899 ~ 33416020 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAAGAACCACTCTCGTCCTCCATTGGTTTGACctgtggacagacagacaaaggaaAGAGTTTATTTGCCAACTCCTGAGAAGATGCTCCAAGACACAGCTTAAGTTCACCAATGATTGTCTGGCACAATCAGTTCCCATCAGTCGGATGGACTTCACTGCTGTGCTGCCTCGACTTCTGTCCCTCTACATCATGTCTTTCCTCAGTCCTCGAGACATCTGCGCCGCAGCACAGGTCTGTTGGCACTGGAAGTTTCTGGCAGAGCAGGACTGTCTGTGGTCTCCAAAGTGTATCCGTCTAGGGTGGTTTCTTCCCTACAGCCCATCAGATTATGAGTATGGTGCGTGGAAAAGACATTATGTAGCATGTGCTGCCAGTTTGGATATTTTGACTCCACGGGAAGCTGCCGATGTCTATGGGACTTTAAATGAGAGTTTGACAGCACCACAAGAGCAAGAGGATAGATGGAGAGAGCACAAGATCAGACAAACCATCAGGGAAAACTTAGCAGAGCATAAAAAAGCAGCTTTGAAGACTAGGAGGGCATGGCTGAACGCCAGTAAATTGGGCACGTCATTTACGGGAACCATTCATAAGCCACTGAGTCTTACTGCTGCTCTTGTTCATCTTGGGGAAAAGTGTCGTTTGAAAAATTCACTCTCCAGTGTGGAAATAAGGAAACCACGGCTTGATTTGAGCATGAAGAGTACTCTCGATAGCACAAGTTTATTGAAAACCACAAGTTCACTGTTCAACAGACCAGTCATGTCCTCCTACTATCCTCTTCCTCACTTTCTACTCGTGTCATCCAAAGTCCCTGGATATGAACTGCTTCTGGCTGCTGTGCAAGTGTCTGTGTTGGTTTTGCCATATGACTCGCAAGGCATGACCTTAGAGGTCTTGTTTTCTCTGGCGGAAAGAGTGATCCAAGGCAGGATGCTGCAAAGCGTTGGCATTCTTGTGCCAGGAAGCACAGATGACATAATGCTTACAGATGAACTGCGCATTACTGAGAAGACAGTTCTGAAGCCGTGTGTGAGGGAATTCTGGGAGAAGTTGTGTGGTTGGGTGGTTCCTGCTTCAGAAGGAGGGAGTCTGAACATCTTTGCTCCTCTGGCAGCATCTGTTGCAGGGATGGGTCTGCTGAGGAAGTTGTCTACTCTGACTGGTCTGAATGTTAAAGCTCCCACAGGGATATGTACAGGCTCCTACCAGCACATTGTCAGTGAGTGGTGTGGGTCAGGTGAGTTTCCTCCGCTGCTGTATCTGCATGAGCCTGTTCTCCTGACCTGGTGCAGACAGGCTGAATGGATAGAGGAAGCCTGCAAAGACCTGCGGAAACAGCTGGAGCCACAGCTGCACTTTATGTGTCAAGAGATCAGAGGCCGCATCCTGGGTCAGTTCCTCTGGGATCGCATAAAGATGCCTGTCTTTTCCTTTAAATCAGAGGTCATGGAGTGTTTGGTTCATGGACTCGTGGCGCTAATGAACGAGGCTCCGGATGATCCAATAGACTTCTTGGGACACTTTCTACTTAAATCATCAGACAACAGCAATGGCTTAAAGAACATCGACCCACTGTTTCTAACAGAAAATACCTCCGTTAACAGCCCCAATCCAGAATCTCCAAAGGTTTTGTTAAGTGACGCAGATAGACGAAGTGCTGTGTTCGGAGAGCTTCTGAATAGTGAGAGAACATATGTAAGGCAACTTCAAGCAGTGGCCACAGTGTATTACAGTCCTCTCAGAGCAGCGCTGGACTCCAACAGAGCCATCATCAGCTCAGTCAACCTCATCACACTCTTCTGCCCTCTGCTGGACATTTTGGAGACTAACAATGCTTTTCTGAAGGAACTGGCTGAGAGATGGCAGGAGTGGAGCCCACTGCAGTGTGTCGGGGATGTTTGGGTCAAGTTTTGCACCAGGTTACGGGTCTACACTAACTTTTTCAACAACTACCCCGCTAGTCTTAAAACTATAGATAAGTGCCGTGAGATGCTTCCTGTATTCCGCAACTTTCTAAAGAGATACGATCGAACCATTGCTACTAGAATGCTGAGTCTCCAGGAGTTGCTTCTCACACCATCCGCACGAGTGGAGGAGTACGTGGCTTTACTTCAGGCGTTAACACTACACACACCACCTGAACACCCAGACTACACACAGCTCACATCCGCCCTCGACACACTGATGACCTACAGAGGCTTCATTCATAAGCTGAAAAAGAGTCTGGATCGAGACTTAAGGATGGTGGAGGTACAGAACACAATTCAGAGCTGCCCGAATTTGCTGGAGGGGAGCAGATACTTGATCAGCACTCAGGATGTGGCATTACTGAACTGCCTTAATGGAGACATTGCTGCCTCTCTCAGGATGTATGAGCATGTGAGTGACGTGGGATTGTTTCTGTTCAATGATGCTCTAGTGCTCACCGAGAGGAGTGTTTCAAGCATGCCTTTTTGTGTGGCAGTGAACACAACTCACACCTTTCTGGCATCTGTGGCTCTACACTGCCTAAATCTCACAGAAATCACAGATACAAAGTATGTTCAAAATGCATTTCAGCTGCAGAGCCCCAAGCGTCAGTGGATCTGTGCTACTGATAGAGAAGAGGAAAAGATCAGGCTGCTGTCTGCTTTACGCAGTGCTATAAATGCTGCCATAACACGTAACTAGTGCTAGGCAGTATGAAAACAGTTTTAGATCACAATAGATGTCTCATatcatgataataatatttatcattatatagTTCCATTTCTGTAAGTTCAATTCTTAAATACTTTACATGTAGttaattaaaatgcataaatgactatttattttttacattttaaaatatatacttcgAAATTTACTCAAAATATATACTCATTCATATGTGATtatattttttcactttatttagaactTTTAGGGAAAATGTTAgattaaaaatttagtttttttattaaaatataaaacaacaaaatattgctactttcaagatcacaattttctttCAATTCTGCAGTTTTTTCAAACAtcttctgtgtttgtctgtattCCCTTAATGCTGTGTAAAATTACGctcatataaattatgaaaaagtatAACCATAAACTAAACAATAGAACATAAAATGAAACAACAGACTATTCATTATaggtatactatatatatatatatatatatatatatatatatacatacatacatacatacatataggcATATTAAACAGCCCTACATGTTACTAATGATAAATGTAGTAAGTAGTTGTTGACTACAAACTATGCAATGAAACTAAAGCATGATGGGCTCTATGGTGAACGGACTGCTCAGATGCAAACTAGAGACATTTTCTAGTGTAGTAGTTAAAATAGCATAGAAATCTTAATTGGGAGGGTCTATGAGTTTAAAAACAAATGGGCACAATACATTTTGTAAACAAGAATTTGTGACTGTCACCTTTTTGATGGATaatgatattttcttctaaaattaacatttttctcaGAATCCTGTATGAttctgaacataaac

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5007 Predicted to enable guanyl-nucleotide exchange factor activity. Orthologous to human CCDC28A (coiled-coil domain containing 28A).

Ensembl:

ensembl_id ENSDART00000157089

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024098 lncRNA downstream 157185 33206780 ~ 33231714 (-) False XLOC_012230
TCONS_00024541 lncRNA downstream 179399 33206954 ~ 33209500 (-) True XLOC_012230
TCONS_00024938 lncRNA downstream 226421 33145594 ~ 33162478 (-) True XLOC_012229
TCONS_00024937 lncRNA downstream 250523 33133819 ~ 33138376 (-) True XLOC_012228
TCONS_00024094 lncRNA downstream 609457 32763343 ~ 32779442 (-) False XLOC_012226
TCONS_00024107 lncRNA upstream 4285 33409586 ~ 33414834 (-) False XLOC_012232
TCONS_00024110 lncRNA upstream 12961 33418262 ~ 33456442 (-) False XLOC_012233
TCONS_00024939 lncRNA upstream 50694 33455995 ~ 33460893 (-) True XLOC_012233
TCONS_00024940 lncRNA upstream 159581 33564882 ~ 33571806 (-) False XLOC_012235
TCONS_00024542 lncRNA upstream 160425 33565726 ~ 33570319 (-) False XLOC_012235
TCONS_00024100 mRNA downstream 99550 33233662 ~ 33289349 (-) False XLOC_012231
TCONS_00024099 mRNA downstream 99595 33232748 ~ 33289304 (-) False XLOC_012231
TCONS_00024096 mRNA downstream 523111 32822588 ~ 32865788 (-) False XLOC_012227
TCONS_00024097 mRNA downstream 525649 32822597 ~ 32863250 (-) True XLOC_012227
TCONS_00024091 mRNA downstream 609343 32745763 ~ 32779556 (-) False XLOC_012226
TCONS_00024105 mRNA upstream 3737 33409038 ~ 33414828 (-) False XLOC_012232
TCONS_00024106 mRNA upstream 4264 33409565 ~ 33415740 (-) False XLOC_012232
TCONS_00024108 mRNA upstream 6658 33411959 ~ 33414781 (-) False XLOC_012232
TCONS_00024109 mRNA upstream 6919 33412220 ~ 33416020 (-) True XLOC_012232
TCONS_00024111 mRNA upstream 96465 33501766 ~ 33552363 (-) True XLOC_012234
TCONS_00024101 other downstream 149613 33238317 ~ 33239286 (-) True XLOC_012231
TCONS_00024095 other downstream 609457 32774917 ~ 32779442 (-) True XLOC_012226
TCONS_00024093 other downstream 635615 32750175 ~ 32753284 (-) False XLOC_012226
TCONS_00024092 other downstream 635994 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024082 other downstream 962795 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024113 other upstream 286397 33691698 ~ 33705464 (-) False XLOC_012236
TCONS_00024114 other upstream 294078 33699379 ~ 33713177 (-) False XLOC_012236
TCONS_00024124 other upstream 1823287 35228588 ~ 35238312 (-) True XLOC_012241
TCONS_00024130 other upstream 2212685 35617986 ~ 35618104 (-) True XLOC_012246
TCONS_00024140 other upstream 3229771 36635072 ~ 36635189 (-) True XLOC_012252

Expression Profile

//