RNA id: TCONS_00024107


Basic Information

Item Value
RNA id TCONS_00024107
length 823
lncRNA type retained_intron
GC content 0.44
exon number 5
gene id XLOC_012232
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33388899 ~ 33416020 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTAAATCCCGGAAGTGCCTTTTGGAAACTTGCTGGTCAGCTGTATCAACTTTAGAGCAGCCCGATCTCATCGAGAATGTCCTTCAAACGGGATAATATTTCAGTCTAAAAGTGGACTCTTCCTTAGTGAGGTGTATTTACAGATAATTTGAACGACACGATGGAGGAAAAGAGTAAGAAACGTAAAAGCCCAAAACCGTCATCCAACCAGCTGCCTCCCTCAGTCCCTGCACGAAAAACTACATCCAGATCATTCGGTGTTGGTGGGATAGGCACACACTCCAGTCAGAGGGCAAAGAATCGCAGGTCAGCATCATCTGTTTTGCTATAAAAATGACTGTTTCTAATTTCAATCTTCAGATTTTTGCAtcgttgtttttatttttggaaaggGGAGCACGAGACAAACCAAGGCCCCAGAGTCAGTCGGGTAAGAGTAACCAGTCAAGCCACATCCAGCACTCGTTTCTCACAGATGTCTCTGATGTTCAGGAGATGGAAAAGGGTCTGCTCAGCCTCCTAAATGACTTCCACTCTGGAAAATTACAAGCTTTTGGCAACGAGTGCTCTATTGATCAAATGGAGCATGTGCGAGAAATGCAGGAAACGCTGGCTCGTCTTCACTTTGACCTGTATGGAGAAGTGGATGAGCTGCCAGAAGACCAGAGAAAGTCTGCTTATGACACCAACATGGATAAACTGTTATTGAACCTTGAAGAGTTGAGCTCCTCAATACAAAAGCTAAACCTTGCTGACACTCAAGATGTCCCCAGAACGTCCAGCATATAATCTACAAACTCTCTACCATgaaaaatttgcata

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5007 Predicted to enable guanyl-nucleotide exchange factor activity. Orthologous to human CCDC28A (coiled-coil domain containing 28A).

Ensembl:

ensembl_id ENSDART00000131807

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024098 lncRNA downstream 177872 33206780 ~ 33231714 (-) False XLOC_012230
TCONS_00024541 lncRNA downstream 200086 33206954 ~ 33209500 (-) True XLOC_012230
TCONS_00024938 lncRNA downstream 247108 33145594 ~ 33162478 (-) True XLOC_012229
TCONS_00024937 lncRNA downstream 271210 33133819 ~ 33138376 (-) True XLOC_012228
TCONS_00024094 lncRNA downstream 630144 32763343 ~ 32779442 (-) False XLOC_012226
TCONS_00024110 lncRNA upstream 3428 33418262 ~ 33456442 (-) False XLOC_012233
TCONS_00024939 lncRNA upstream 41161 33455995 ~ 33460893 (-) True XLOC_012233
TCONS_00024940 lncRNA upstream 150048 33564882 ~ 33571806 (-) False XLOC_012235
TCONS_00024542 lncRNA upstream 150892 33565726 ~ 33570319 (-) False XLOC_012235
TCONS_00024941 lncRNA upstream 154759 33569593 ~ 33571801 (-) True XLOC_012235
TCONS_00024103 mRNA downstream 1743 33389749 ~ 33407843 (-) False XLOC_012232
TCONS_00024102 mRNA downstream 4285 33388899 ~ 33405301 (-) False XLOC_012232
TCONS_00024100 mRNA downstream 120237 33233662 ~ 33289349 (-) False XLOC_012231
TCONS_00024099 mRNA downstream 120282 33232748 ~ 33289304 (-) False XLOC_012231
TCONS_00024096 mRNA downstream 543798 32822588 ~ 32865788 (-) False XLOC_012227
TCONS_00024111 mRNA upstream 86932 33501766 ~ 33552363 (-) True XLOC_012234
TCONS_00024112 mRNA upstream 273386 33688220 ~ 33707589 (-) False XLOC_012236
TCONS_00024115 mRNA upstream 293848 33708682 ~ 33716688 (-) False XLOC_012236
TCONS_00024116 mRNA upstream 294857 33709691 ~ 33714636 (-) True XLOC_012236
TCONS_00024118 mRNA upstream 1394809 34809643 ~ 34963575 (-) False XLOC_012239
TCONS_00024101 other downstream 170300 33238317 ~ 33239286 (-) True XLOC_012231
TCONS_00024095 other downstream 630144 32774917 ~ 32779442 (-) True XLOC_012226
TCONS_00024093 other downstream 656302 32750175 ~ 32753284 (-) False XLOC_012226
TCONS_00024092 other downstream 656681 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024082 other downstream 983482 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024113 other upstream 276864 33691698 ~ 33705464 (-) False XLOC_012236
TCONS_00024114 other upstream 284545 33699379 ~ 33713177 (-) False XLOC_012236
TCONS_00024124 other upstream 1813754 35228588 ~ 35238312 (-) True XLOC_012241
TCONS_00024130 other upstream 2203152 35617986 ~ 35618104 (-) True XLOC_012246
TCONS_00024140 other upstream 3220238 36635072 ~ 36635189 (-) True XLOC_012252

Expression Profile

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