RNA id: TCONS_00024953


Basic Information

Item Value
RNA id TCONS_00024953
length 1693
lncRNA type sense_over
GC content 0.43
exon number 3
gene id XLOC_012250
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 36482587 ~ 36513936 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCATGAGGTCATTCAGTGAGTAATTGCAGGCGCTCCGGAGCTGCCATCACTTTACTCATAAGAGCGGAGCCAGCAGTCCTCGTGATGGAGTTGAGTTTCCCTTCGCTCATGCAGATTTCACATTAGCCTCGGACGGTACGTCTGCAGCCATGCTTATAAAAGCCCCTCGATGAAGGCTCATACCTACTCTGGACACTCGATCACGTCCCATGGGGCAGAAGATCCACATAATGTCATTCCTAATGGCAgagagcgaaaaaaaagaaataaaactagaAACCTCCTTTTAACTACATCAATTGCTGCAGAGGCATAATCAAACATGCCATGACTGAAAGAGCCATTCCCATCACCTACCGAAGGAGGAGTGCATCTGCTGTCAGCCTATCATTAGCCGAGATTGTCTTACCTTTGAATGTCAAAGGCACCAAGCAATGCAGTTTGCATCTCAGGATCAAGAAAGCCCATTAAATGCTTTGTGAAGTGCTGAGCTCGGTCGGGCTTGATTTGATGTGAGGTGAAGTGTTCTGGGTAATGCTGAAGAGTGTTTATCACTTTAACCCTCATGTCTTGTCTGCCGAAAGAAGACGTTCCATCTCCAGacagAAAGAAGTGTCTTCAGAGCCACCAACAAAAGGAAGGAGGCAGTAGTAGCATCTGAAGTCCCGGAAGATGAAAATATAAAGGTGGATCTTCCATTAGAACAGATGGAAGTGGAAGAAGTCGAGGAGGAACAAAACTCCTATACAGACGTCCAACTAGAAGACAGTGGTGATAGCCCTGCCAAAAATGTTCAAAACTATCCAAATTTATCTCCTTCCAGGATCAATAAGGTCAAAGAGAATTTAGCTTGCACTCTAAAAATGCCTTCTCTGCATACAATCTGAATGTCAACTGTTTACTGACCAGCGACAGTAGGGTGTGCTGAAATTGTTTTGTTGGCTTGTTTAGATGTATTTGGTCTGTATTGCATATTACAGTCAAGCCACAGAAGTTTTCAGAGGTCTCAGTCTACTTGTTTGGTTCACACCAAGGATCAGATTGGAACGTTCATACTTAATGGGCCATATTAACAGAGCTGTTGTACGAAAGCTACTTTGAACTGTATGTTATGTAActttactggccactttatttggtacaccagtccaactgctcgttaatgcaaattttttaatcagccaatcacatggcagcaactcaatgcttttaggcatgtagacataggctgcgtctgaaaccgcctactactcaataggtactgcatttgaatttaaacgtactactctgccattagaaaagtatgttctatacagtatgaatgtgaaaagtatgaatggaattcggacgcaCTACAtacgccattttgtcatggtcacgtgacctacctgcgtcaattgcgtcgcctcacttccattcatgaattctctcatggggcattatgggatagcgcagcatgcatgggatgcgcacttcagaatctcgccggaattagtaagtcatccaggtacttctcgcctactgattttcgaattctatgaattcggacatactactcggctcgcatactgattttagcgtactatatagtatggaagtatgcagtttcggatgCAGCtatagtcaagacgatctgctgaagttcaaaccaagcatcagaatggggaagaaaggtgatttaagtgactttgaa

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:1902850 microtubule cytoskeleton organization involved in mitosis biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024135 lncRNA downstream 5853 36446514 ~ 36476734 (-) True XLOC_012249
TCONS_00024952 lncRNA downstream 18066 36446514 ~ 36464521 (-) False XLOC_012249
TCONS_00024950 lncRNA downstream 142008 36214510 ~ 36340579 (-) False XLOC_012248
TCONS_00024951 lncRNA downstream 142014 36310866 ~ 36340573 (-) True XLOC_012248
TCONS_00024134 lncRNA downstream 267087 36053465 ~ 36215500 (-) False XLOC_012248
TCONS_00024141 lncRNA upstream 187385 36673484 ~ 36675877 (-) True XLOC_012253
TCONS_00024167 lncRNA upstream 805356 37291455 ~ 37299381 (-) True XLOC_012264
TCONS_00024954 lncRNA upstream 876925 37363024 ~ 37365357 (-) True XLOC_012267
TCONS_00024173 lncRNA upstream 901880 37387979 ~ 37395447 (-) True XLOC_012268
TCONS_00024955 lncRNA upstream 1282542 37768641 ~ 37771340 (-) True XLOC_012271
TCONS_00024131 mRNA downstream 600746 35878544 ~ 35881841 (-) False XLOC_012247
TCONS_00024128 mRNA downstream 1121265 35357451 ~ 35361322 (-) True XLOC_012244
TCONS_00024127 mRNA downstream 1129897 35285876 ~ 35352690 (-) True XLOC_012243
TCONS_00024126 mRNA downstream 1203165 35250157 ~ 35279422 (-) True XLOC_012242
TCONS_00024125 mRNA downstream 1203824 35247497 ~ 35278763 (-) False XLOC_012242
TCONS_00024138 mRNA upstream 30596 36516695 ~ 36529449 (-) False XLOC_012251
TCONS_00024139 mRNA upstream 30598 36516697 ~ 36529016 (-) True XLOC_012251
TCONS_00024142 mRNA upstream 200995 36687094 ~ 36818176 (-) False XLOC_012254
TCONS_00024143 mRNA upstream 201001 36687100 ~ 36841981 (-) False XLOC_012254
TCONS_00024145 mRNA upstream 201074 36687173 ~ 36842267 (-) False XLOC_012254
TCONS_00024130 other downstream 864483 35617986 ~ 35618104 (-) True XLOC_012246
TCONS_00024124 other downstream 1244275 35228588 ~ 35238312 (-) True XLOC_012241
TCONS_00024114 other downstream 2769410 33699379 ~ 33713177 (-) False XLOC_012236
TCONS_00024113 other downstream 2777123 33691698 ~ 33705464 (-) False XLOC_012236
TCONS_00024101 other downstream 3243301 33238317 ~ 33239286 (-) True XLOC_012231
TCONS_00024140 other upstream 148973 36635072 ~ 36635189 (-) True XLOC_012252
TCONS_00024159 other upstream 464339 36950438 ~ 36950555 (-) True XLOC_012260
TCONS_00024168 other upstream 823230 37309329 ~ 37309446 (-) True XLOC_012265
TCONS_00024169 other upstream 824563 37310662 ~ 37311810 (-) False XLOC_012266
TCONS_00024174 other upstream 903904 37390003 ~ 37390117 (-) True XLOC_012269

Expression Profile

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