RNA id: TCONS_00024164


Basic Information

Item Value
RNA id TCONS_00024164
length 3972
RNA type mRNA
GC content 0.48
exon number 12
gene id XLOC_012262
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 37162571 ~ 37195354 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCAGTATTAACAAGCGAGCCAAGAGCTCTAGTAAATGCGCGATGAAAAATTGCACAATGTACGCGTAAAATGGATACTGTGTACGCGTGTGTGTCTTTTTGCAGCTTGAAACATTGATACAGGTGAAAACAAAGGGTCGAGAGTATGTAGGTGGTTTCCCCTGAACTGTCATCGTAGCGTTACAGTAAGATGACGTTTCCCAGAGGGTCACATGGTTCGCCTCTTACAGTAAAAACCCAATATGGCAGAGATGGCAGGTCTTGCAGGGTAACTAAAGCAACATCAACACTTCGCACAGCACACAGGTCGGTTACCCGCGACCGAGCGCAGACATGAGGGAAcgacagaagaagaaaaagggCAGAACATGGGCAGAGGCCGCCAAAACGGTGCTTGAGAAGTACCCCAACACACCCATGAGTCATAAAGAGATCCTGCAAGTGATTCAGAGAGAAAGGCTGAAGGAGATAAGtagtgGCACTTCTCCTCTTGCTTGTCTCAATGCCATGCTCCATACAAACTCACGTGGAGATGAAGGGATCTTCTATAAGGTTCCAGGCCGAATGGGAGTCTACACACTGAAGAAGGACATTGGAGATGGGGTGAAGGAACTGTCAGAAGATGCTTCAGACGACAGCAGCGACATGTCGGATTCTCGATGCACAGAAAATACCAGCAGCACTGGCTACAGCAAGGACGGACGCAGAAGAAGGTGGACAAGGAGAGTGCCAACAAAACTGCAGTCTCAGCCGTCCTCCCCGCAGTCTCGCTGTTCATCTCCATCAGTCTCCAGCAGCAAACTCATGTCTCCATCACAGAAACACAGCAAGAAGGCCCTCAAACAGGCACTgaaacagcagcagcagagaaATCAGCGGCGACAATGTGGAATCTCTAATGCCTCCAGCCCACGACTGCTCCTCAAGACTGTCAAAGACATGGCTCATGACTCCTCCAAAtcttCCTGGGAGCTGAAAAAGAGTGAACGCTGCCCTGCCAGTCCACATAACTCTACCTCCAGCTCATCCTCCTCTGTCAAAGCAGATGTGTGCCACACATCCAGTGCCCGCAAGGTGTCGCAGCGCTCCAGCCGGCTAAATGCCAGACAATTGAGACGCAGCAGGTGTGAGATAGACGTGGAGACACCAGATTCCATCCTTGTCAACACCAACCTGAGAGCACTAATCAACAAGCACACCTTCTCACTGCTGCCTACAGATTGTCAACAGAAGCTGCTTAAGATGCTGCCTGAGGTTGACCAGCAGGCCAGTATGGATGGAGCCTTGAAGGTGACCAGCTCTGCCTTGAACAATGAATTCTTCACATCAGCAGCACAGTCTTGGAAGGAGAGGTTGTCAGAGGGTGAATTCACGCCAGAGCTGCGACTGAGAATGCGGCAGGAAATTGAGAAGGAAAAGAAGGTGGATCTTTGGAAAGAGCAGTTTTTCGAAAGCTACTATGGTGAACATTCTGGCTTGTGTATAGAGGAATCCAAGGAGTTGACAGAGGCTAAAGAACTTCCTGAACCAGCTAAGAAAGCAGTTGTACCAGTAAAGCCAGAGATTGTCATTGAGCCTCGGAAGGTAAATCCGGTTATAGAGGTCATTCACATGGAGCTGAGATCCAGAGATGTGAAATCAACTGTAATGCATACCTCTCCTGAAGAGCCTGTCAAACTTCCTGCCTCTGAGAAATCACGTTTATCCTTAGACACGAAAAAGGATGTACTGGTGGAATTGATTCCAGTGTCTTCTACACAGAAAATGGTGGATCCCAAACCAGACAGTGAGAAAACACTGGAGAGTGAGATCAGATGTAAGACCCCAACATCTCCTTTGGAAGCAATGGTAACTTGCTTGAAAAGAAAAGAGACACATAGCACAAAAGAGGAAAGTCCTGTTAGTGGGGCTGGACAGGCATTAACGGAAAGGAATAAGGGTGGATCTACAGCAACTGCTGTCACGTCTGAACCTCTGAAAAGAAAAATCTCTAGTGAACAAGATGCAGAAGTCATAACAGAGAAGAAACCCCGCAGCTCTTCACCAGAAGAGTCACCAACAGTGACAGCTAAGGAAAAATTAGAACAGAGAGTACCTCCTCTCAAAATCCCAGTCTCAAGAATACTCTCTGCCCCTGCTTCTATTGAGCAGATATCTCCAAGGACTCCTGTTCCCTTGACCCCTCCTAGCGTCCGACCGGGACGTACAGGGGCACGCACTCTTGCTGACATCAAGGCAAAAGCCCAGTTAGCACGCGCACAGCGTGCTGCCGCAGCAGCAGCCAGATCATCTTCCTCAAAGGGAACTGGCTCAGTTGGAGGTACCTCAACACCCTCTCCAGCTCGGTCCCTTTCAGAAGATTTTTCACCAGCAAGCAGCAAAAGTCAATCTGTGTCACCTATAAAGTTAAGCTCGGGATCTCCTGCCCCTGAAGGCACAGTGACTCTCTCACAAACCTTTCCTTCCTCAGGTTCTGCAGGATACACCGACCCTGTTTTTGCGCAGGCCTTCAGTGCGAGCCAgggttttttaaaagaaaatcgcTCTTCGTTTGGGTTGCAAACCACTCAGTGCTCATTGAACCCAATAGGCAAGGATCAGCATTACCTTCTTTGTCCTGAAGGCACATTAGCACCTTCAGGTCAAGCAGGAAACGTGACTGTCTCAAACACAATTGCACAAAGCCAGAGACCACAGCAGACTCTTTTTGCAGGAGCATCAGCTGCCAAGCTTATCTCTTCAATCCCAGAAAATAATCCTCTGGTCACCCAGCTTCTTCAAGGTAAAGAGGTTCCCTTAGAAAAAATTCTCCCAAAGCCACTAACCAATGCTGAGGTTCAATCTGTGGCAATTTCTGCCAGGGATAAAGGGAACCTTGACACCACTACTGCTGGGTGGAAAAAAGATAGCCCAACTATTCAAGAAGTCAGCAAATTTGTGAACCAAGTTCCTTTCGACCAACCTGCGAAGCAAGTCAGTAGTAGGGACAAATTTGTCAAAGTCGGCACTCAGGACAGGATCCTCCAACCACTAAGGGAGCAGAAGCACACCAGCTCAAACCGTCAATCTTCCCAGTTTCATTCCTGCCATTTAGGTCACCCTGAGAGTAGCCAGGACCAGAGTGTCCATCTCGGAATCTTTGGACGGAAAAGAATATCGAAGCCAGCTATGACAGGACATTACCTCCTCAATGTCTCCACATATGGTAGAGGATCTGAGAGCAGCAAACGGCCACATCAGGCTAGTAATACAAGCACTACCCTAGCCAAcctgaaaaaagagaaaattgaaGCAGAGGATAGTGTGAAAGGGACGACGGAATCACTTGCCGGTACCACTTCTCAAGGACACGCACCTTTCCCAAGTGTCAAAGTGGAACAGCAGGGATGTTTCATCAGCAAACCAGATGATGGTTTGGCACCTCAACCATGTACTGATGTAAAGTCTGAATCTCCATCGCTGAGCTGTTTGTCCAGCAAAGAAGAAGGCAGCTCTTCAACTAGAACCAAAGAAACATGCTCAAAAGGGCAGCTTGATATGTGCAGCACTATACAGGGTAAAACAGAGCCATATCAATTAAGTGACTGTCACCAACGCATGTTCTTGCCTCAGAAAGCCCATAATGGAACTCAGTATGGTGGCAGTATAAGCATGTCTGTCCCTCATGCACTGAACCACAGCATGCCTGACACTCCGTCCTGCAGTGGCGATGGTGAAACGGCTGGTGGAGGTATGATGTCTTTTTCTGTCACGGTCACCACCATACCTGCCGGCCACCTACTGGATCAGAGCAGTCAGAGGGAGACCTCACCTGAGGAAGCCTTCATAGAAACCTCTGGAATGGAGGATGTCCAGTCAAAGTGCTACTGTCGACTGAAGGCCATGATTATGTGCAAGGGATGTGGTGCATTCTGTCATGATGATTGCATTGGTCCATCCAAACTATGTGTCTCGTGTTTGGTGGTACGATAA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0035517 PR-DUB complex cellular_component
GO:0042975 peroxisome proliferator activated receptor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100412-1 Predicted to enable chromatin binding activity and peroxisome proliferator activated receptor binding activity. Predicted to be involved in animal organ morphogenesis and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of PR-DUB complex. Orthologous to human ASXL2 (ASXL transcriptional regulator 2).

Ensembl:

ensembl_id ENSDART00000190963

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024141 lncRNA downstream 487189 36673484 ~ 36675877 (-) True XLOC_012253
TCONS_00024953 lncRNA downstream 676967 36482587 ~ 36486099 (-) False XLOC_012250
TCONS_00024135 lncRNA downstream 686332 36446514 ~ 36476734 (-) True XLOC_012249
TCONS_00024952 lncRNA downstream 698545 36446514 ~ 36464521 (-) False XLOC_012249
TCONS_00024951 lncRNA downstream 822493 36310866 ~ 36340573 (-) True XLOC_012248
TCONS_00024167 lncRNA upstream 96101 37291455 ~ 37299381 (-) True XLOC_012264
TCONS_00024954 lncRNA upstream 167670 37363024 ~ 37365357 (-) True XLOC_012267
TCONS_00024173 lncRNA upstream 192625 37387979 ~ 37395447 (-) True XLOC_012268
TCONS_00024955 lncRNA upstream 573287 37768641 ~ 37771340 (-) True XLOC_012271
TCONS_00024956 lncRNA upstream 827789 38023143 ~ 38025926 (-) False XLOC_012273
TCONS_00024160 mRNA downstream 6546 37070096 ~ 37156520 (-) False XLOC_012261
TCONS_00024161 mRNA downstream 10888 37073344 ~ 37152178 (-) True XLOC_012261
TCONS_00024156 mRNA downstream 108107 36939580 ~ 37054959 (-) False XLOC_012259
TCONS_00024155 mRNA downstream 110444 36936918 ~ 37052622 (-) False XLOC_012259
TCONS_00024165 mRNA upstream 8875 37204229 ~ 37214196 (-) True XLOC_012263
TCONS_00024166 mRNA upstream 92498 37287852 ~ 37299394 (-) False XLOC_012264
TCONS_00024170 mRNA upstream 115309 37310663 ~ 37312922 (-) True XLOC_012266
TCONS_00024171 mRNA upstream 190457 37385811 ~ 37395460 (-) False XLOC_012268
TCONS_00024172 mRNA upstream 190457 37385811 ~ 37395496 (-) False XLOC_012268
TCONS_00024159 other downstream 212511 36950438 ~ 36950555 (-) True XLOC_012260
TCONS_00024140 other downstream 527877 36635072 ~ 36635189 (-) True XLOC_012252
TCONS_00024130 other downstream 1544962 35617986 ~ 35618104 (-) True XLOC_012246
TCONS_00024124 other downstream 1924754 35228588 ~ 35238312 (-) True XLOC_012241
TCONS_00024114 other downstream 3449889 33699379 ~ 33713177 (-) False XLOC_012236
TCONS_00024168 other upstream 113975 37309329 ~ 37309446 (-) True XLOC_012265
TCONS_00024169 other upstream 115308 37310662 ~ 37311810 (-) False XLOC_012266
TCONS_00024174 other upstream 194649 37390003 ~ 37390117 (-) True XLOC_012269
TCONS_00024188 other upstream 1791942 38987296 ~ 38987415 (-) True XLOC_012280
TCONS_00024189 other upstream 1954213 39149567 ~ 39149683 (-) True XLOC_012281

Expression Profile

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