RNA id: TCONS_00024954


Basic Information

Item Value
RNA id TCONS_00024954
length 1877
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_012267
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 37363024 ~ 37365357 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATACTGTTACAAATGGTcatgtttattgtgtttttccTTGTTTATTATTCTAAAACACATGAGGAAAACACAACTGAAACACAATAAGTTACACTGTAGTAAAAAGCACTTCAGAGTTTCTCTCCACAGCCGTCATTAGTGTACAAGCCCCTATGAAAATAGCATAGAAAGTGTGCATATACAGTCTTAAGAAGCCTTTATCATACTTAACATTCCTCTGCAGAAGAAATTTCCCTTGGCTGAATGAAAAGACAGAAACGGGAGGTTCACCCTTTACAATTCCCTCCAATTCAATTTCatatttcaacaacaacaacaacaaaacacaacatcgataacaataacaaaaaagctTGGCTAAACCATTTCAACAAAATGCCCATATCTTCATATTCGAGCGAATCAGTCTTTTCACATATGTCAACaagaatataatatatatatttatatttgttttcaaaaaaaattaagaaaaagacattaaatatcttctttttctcACTTGGCTTTTGAGTTTGAAACAGTTTTTGAGTATCGGTGATCAACTACACACAACCACGCAtgcaaaataaacacaaacacatgaatACGCTCtttctctcacacgcacacacacatacgcacgctGCATAGAAGACTTGTGTGTTATCAGCAATAATTGGAGCCGTTACTGTTGGCGTTGAATCCCCAGTGTGTCTCTCTTTTAAAAAGAAGACTCTTTGCTGCCATAGAAACGAAGCCAAGTGCTTAAGTGTTTGGCCAGCGGAGAGACAGAAACCCGAGCTGCTTCTACTGTACAACTGCCCTTAAAACTCACCAACCACTCGCGTTTGTTCTTGTACTAAAATATAACTTGATTATCTAATACTTTTTTTGTTCAAAGATGCTGAGAAGGAGATCAAATAAGTCGTCGAGTGGGTGGGAACTCAACACGAGTCCCGCTATTGCTATATTGCACTTGGagtgtgttttttatatataatcatGCTCTCAGCGAGTGTTTGTTATCTTCAAATTCAACGCAGGTAGCAAAACTAAAAGTCAAATGAGAAAAAGAATTACCTCCAACCCCCcctttacataataataaaacaatacaaagctGATAGTGACACTACTAACAGCCAATGATTATATCAAGGACAACCGTTGTATATATAAAAGAACGTTTGTAAAAGTGATTGTCTTGTAAAGATAGAAAGTGTCGAAAACATCGAAGGCATCAGCGAGGTCACCAGTTTAtactaaaggaatagttcatctcAAAAAAAGGAGGAAAATTCTAGAACCACGTCATCACCTTAGATTAGGGTTTCTCAACCAtgctcctggaggaccaccaacactgcatgttttgcatgtctcctttgtcacacctattacaggtctttcagtctctgctaatgagctgatgatctgaatcaggtgtgtttggttaagagacatgaaaaaaatgtgcaaagctggtggtcctccaggaacgtggttgagaaacacgacattagatctttttaaatgtgtattttaagaGTGGGAAAAATAAGACGTTAAGCAGAATTTTCAAGCTGCCCTTTTAGAATTACCGGGCCTTCAAGCtttagaaagacaaaaaaaaaagtaacaataaaagTGGTTTATTCTAATTGTTTACCATATTTAAAGATTTCTGGTGCTACTATAATGCATTTGTTTaactaaaaaatctattttattattatcaagaaATAATATATCGTAGCTTTCATGCCTGCCTGTACACGCATATCTAAATGTAGtaaattgcagtttttttttgtatgtgtgcatACTATACTATGCTTGTTTAATATGTATCAGTTTGTTcttgtgtttATTTTTAGCTCAACCTTATTTTCC

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0060897 neural plate regionalization biological_process
GO:0035295 tube development biological_process
GO:0009888 tissue development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024167 lncRNA downstream 63643 37291455 ~ 37299381 (-) True XLOC_012264
TCONS_00024141 lncRNA downstream 687147 36673484 ~ 36675877 (-) True XLOC_012253
TCONS_00024953 lncRNA downstream 876925 36482587 ~ 36486099 (-) False XLOC_012250
TCONS_00024135 lncRNA downstream 886290 36446514 ~ 36476734 (-) True XLOC_012249
TCONS_00024952 lncRNA downstream 898503 36446514 ~ 36464521 (-) False XLOC_012249
TCONS_00024173 lncRNA upstream 22622 37387979 ~ 37395447 (-) True XLOC_012268
TCONS_00024955 lncRNA upstream 403284 37768641 ~ 37771340 (-) True XLOC_012271
TCONS_00024956 lncRNA upstream 657786 38023143 ~ 38025926 (-) False XLOC_012273
TCONS_00024957 lncRNA upstream 657786 38023143 ~ 38026611 (-) True XLOC_012273
TCONS_00024958 lncRNA upstream 1347269 38712626 ~ 38714935 (-) True XLOC_012276
TCONS_00024170 mRNA downstream 50102 37310663 ~ 37312922 (-) True XLOC_012266
TCONS_00024166 mRNA downstream 63630 37287852 ~ 37299394 (-) False XLOC_012264
TCONS_00024165 mRNA downstream 148828 37204229 ~ 37214196 (-) True XLOC_012263
TCONS_00024164 mRNA downstream 167670 37163066 ~ 37195354 (-) True XLOC_012262
TCONS_00024162 mRNA downstream 167861 37162571 ~ 37195163 (-) False XLOC_012262
TCONS_00024171 mRNA upstream 20454 37385811 ~ 37395460 (-) False XLOC_012268
TCONS_00024172 mRNA upstream 20454 37385811 ~ 37395496 (-) False XLOC_012268
TCONS_00024175 mRNA upstream 80168 37445525 ~ 37474689 (-) True XLOC_012270
TCONS_00024176 mRNA upstream 427260 37792617 ~ 37795865 (-) True XLOC_012272
TCONS_00024178 mRNA upstream 871112 38236469 ~ 38244117 (-) False XLOC_012274
TCONS_00024169 other downstream 51214 37310662 ~ 37311810 (-) False XLOC_012266
TCONS_00024168 other downstream 53578 37309329 ~ 37309446 (-) True XLOC_012265
TCONS_00024159 other downstream 412469 36950438 ~ 36950555 (-) True XLOC_012260
TCONS_00024140 other downstream 727835 36635072 ~ 36635189 (-) True XLOC_012252
TCONS_00024130 other downstream 1744920 35617986 ~ 35618104 (-) True XLOC_012246
TCONS_00024174 other upstream 24646 37390003 ~ 37390117 (-) True XLOC_012269
TCONS_00024188 other upstream 1621939 38987296 ~ 38987415 (-) True XLOC_012280
TCONS_00024189 other upstream 1784210 39149567 ~ 39149683 (-) True XLOC_012281
TCONS_00024190 other upstream 2166458 39531815 ~ 39531929 (-) True XLOC_012283
TCONS_00024191 other upstream 2276324 39641681 ~ 39641798 (-) True XLOC_012284

Expression Profile

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