RNA id: TCONS_00024171


Basic Information

Item Value
RNA id TCONS_00024171
length 657
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_012268
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 37385811 ~ 37395496 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACCAAAGGCGTGGCTGCGTGCAGGTGGACCGTTGCTGCTCTCCATCTCAACTTTACATCAAACAGGACTTTTTCTTTCTCCTCCGAGGGACTAAATCAACGCAAACATGCCTAAATGCCCCAAGTGCCAAAAGGAAGTGTACTTTGCGGAGAGAGTGACGTCACTTGGCAAAGACTGGCATAGACCCTGTCTGAAGTGTGAGAAATGCAACAAGACCCTGTCCGCTGGCTCACATGCAGAGcatgaagggaAGCCCTACTGTAACAACCCATGCTACGCTGCACTCTTTGGACCCAAAGGTTTTGGACGTGGTGGAACTGAGAGCCACACATTCAAATAGGCCATTGCATTAGTCAGttcatattaaaaacatttaataaaccaACCAACTCTACCAATGCATACAGCAGATCATGTAACGTACTGTACGCTAACTGCATTCTTCTGTTTCATTTACAGGTTTACTCACTCCGTGTGCTTGTTTTTAGAGGAGCTCAATGTTTTGTCACTATTTTTATCTGCATATTGTAAAACCAAAGACAAAAAGAACCAAGGCATGTTATGTTTTAGAAAGTACTCATTTGTATAATGTGTGAAGTTTAATCAGGGGCACCAGTCGTAGACCCCTTAACAATTAAACTGAACATGATTTACA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0010468 regulation of gene expression biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0071493 cellular response to UV-B biological_process
GO:0071236 cellular response to antibiotic biological_process
GO:0060047 heart contraction biological_process
GO:0010043 response to zinc ion biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0042277 peptide binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-041111-1 Predicted to enable peptide binding activity and zinc ion binding activity. Acts upstream of or within heart contraction and heart development. Predicted to be located in cytoplasm. Orthologous to human CRIP1 (cysteine rich protein 1).

Ensembl:

ensembl_id ENSDART00000148160

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024954 lncRNA downstream 20454 37363024 ~ 37365357 (-) True XLOC_012267
TCONS_00024167 lncRNA downstream 86430 37291455 ~ 37299381 (-) True XLOC_012264
TCONS_00024141 lncRNA downstream 709934 36673484 ~ 36675877 (-) True XLOC_012253
TCONS_00024953 lncRNA downstream 899712 36482587 ~ 36486099 (-) False XLOC_012250
TCONS_00024135 lncRNA downstream 909077 36446514 ~ 36476734 (-) True XLOC_012249
TCONS_00024955 lncRNA upstream 373181 37768641 ~ 37771340 (-) True XLOC_012271
TCONS_00024956 lncRNA upstream 627683 38023143 ~ 38025926 (-) False XLOC_012273
TCONS_00024957 lncRNA upstream 627683 38023143 ~ 38026611 (-) True XLOC_012273
TCONS_00024958 lncRNA upstream 1317166 38712626 ~ 38714935 (-) True XLOC_012276
TCONS_00024183 lncRNA upstream 1359274 38754734 ~ 38760657 (-) False XLOC_012277
TCONS_00024170 mRNA downstream 72889 37310663 ~ 37312922 (-) True XLOC_012266
TCONS_00024166 mRNA downstream 86417 37287852 ~ 37299394 (-) False XLOC_012264
TCONS_00024165 mRNA downstream 171615 37204229 ~ 37214196 (-) True XLOC_012263
TCONS_00024164 mRNA downstream 190457 37163066 ~ 37195354 (-) True XLOC_012262
TCONS_00024162 mRNA downstream 190648 37162571 ~ 37195163 (-) False XLOC_012262
TCONS_00024175 mRNA upstream 50065 37445525 ~ 37474689 (-) True XLOC_012270
TCONS_00024176 mRNA upstream 397157 37792617 ~ 37795865 (-) True XLOC_012272
TCONS_00024178 mRNA upstream 841009 38236469 ~ 38244117 (-) False XLOC_012274
TCONS_00024177 mRNA upstream 841009 38236469 ~ 38244117 (-) False XLOC_012274
TCONS_00024179 mRNA upstream 847483 38242943 ~ 38291065 (-) True XLOC_012274
TCONS_00024169 other downstream 74001 37310662 ~ 37311810 (-) False XLOC_012266
TCONS_00024168 other downstream 76365 37309329 ~ 37309446 (-) True XLOC_012265
TCONS_00024159 other downstream 435256 36950438 ~ 36950555 (-) True XLOC_012260
TCONS_00024140 other downstream 750622 36635072 ~ 36635189 (-) True XLOC_012252
TCONS_00024130 other downstream 1767707 35617986 ~ 35618104 (-) True XLOC_012246
TCONS_00024188 other upstream 1591836 38987296 ~ 38987415 (-) True XLOC_012280
TCONS_00024189 other upstream 1754107 39149567 ~ 39149683 (-) True XLOC_012281
TCONS_00024190 other upstream 2136355 39531815 ~ 39531929 (-) True XLOC_012283
TCONS_00024191 other upstream 2246221 39641681 ~ 39641798 (-) True XLOC_012284
TCONS_00024224 other upstream 5429831 42825291 ~ 42842863 (-) True XLOC_012313

Expression Profile

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