RNA id: TCONS_00024198


Basic Information

Item Value
RNA id TCONS_00024198
length 532
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_012291
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 40009376 ~ 40022249 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTCCTCACGACGAGCTGAGGGGTGTGGAAGAAGGTCAAACAAACTTTTTGGCCGGCATGGCTTTTAGAACCAAAGACTGAACCGGATCATGATGCAGACTACAGGAAAAGTTGAATGATCCGATCCACAGGAAGAAGAGGGCCGCGTTGAATGCTCGTGTGATAGTGGCGGCTGGATTGGAAAGGCTGTTTCTGGGATTCGACATGCAAAGGAGCTTTGCGTTTGGCTAAGGAGCAGCGCATGAGGACTCCATTGTTTCTTCTTGATCTACACAAGCATTGGATTATGAAGGTATGAGATGTGACATTTTTAAAGCTTGAGCTACCATCAAACTGACTTTACATTTACATGGccatttaaaagaagaaaaagatgTGTGCAGAGTAAAAAAAAGGGTTTGTCTGTTTGTTATGGTTTATTTGTCAGTGTTTACAATGAGTTTGAGTCAAGTATGTGCTGTGTATATGATGTAAATAATGTGAATGTTTTACAGTTCAAATGGCTGATAAAAGTGAAACTGGTGTTTCTAA

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0009060 aerobic respiration biological_process
GO:0001501 skeletal system development biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0005615 extracellular space cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024960 lncRNA downstream 155437 39864881 ~ 39866039 (-) True XLOC_012289
TCONS_00024959 lncRNA downstream 473989 39500572 ~ 39547487 (-) True XLOC_012282
TCONS_00024183 lncRNA downstream 1260819 38754734 ~ 38760657 (-) False XLOC_012277
TCONS_00024958 lncRNA downstream 1306541 38712626 ~ 38714935 (-) True XLOC_012276
TCONS_00024957 lncRNA downstream 1994865 38023143 ~ 38026611 (-) True XLOC_012273
TCONS_00024963 lncRNA upstream 266754 40289003 ~ 40423207 (-) False XLOC_012293
TCONS_00024964 lncRNA upstream 266754 40289003 ~ 40512375 (-) False XLOC_012293
TCONS_00024965 lncRNA upstream 266754 40289003 ~ 40512790 (-) True XLOC_012293
TCONS_00024546 lncRNA upstream 694667 40716916 ~ 40718108 (-) True XLOC_012294
TCONS_00024966 lncRNA upstream 696666 40718915 ~ 40719383 (-) True XLOC_012295
TCONS_00024197 mRNA downstream 134848 39877011 ~ 39886628 (-) True XLOC_012290
TCONS_00024196 mRNA downstream 140751 39873584 ~ 39880725 (-) False XLOC_012290
TCONS_00024195 mRNA downstream 235254 39783268 ~ 39786222 (-) True XLOC_012288
TCONS_00024194 mRNA downstream 241570 39776296 ~ 39779906 (-) True XLOC_012287
TCONS_00024193 mRNA downstream 248477 39768680 ~ 39772999 (-) True XLOC_012286
TCONS_00024199 mRNA upstream 86810 40109059 ~ 40110782 (-) True XLOC_012292
TCONS_00024200 mRNA upstream 188906 40211155 ~ 40397752 (-) False XLOC_012293
TCONS_00024201 mRNA upstream 837767 40860016 ~ 40879108 (-) False XLOC_012297
TCONS_00024202 mRNA upstream 837813 40860062 ~ 40876680 (-) True XLOC_012297
TCONS_00024203 mRNA upstream 889822 40912071 ~ 40956035 (-) True XLOC_012299
TCONS_00024191 other downstream 379678 39641681 ~ 39641798 (-) True XLOC_012284
TCONS_00024190 other downstream 489547 39531815 ~ 39531929 (-) True XLOC_012283
TCONS_00024189 other downstream 871793 39149567 ~ 39149683 (-) True XLOC_012281
TCONS_00024188 other downstream 1034061 38987296 ~ 38987415 (-) True XLOC_012280
TCONS_00024174 other downstream 2631359 37390003 ~ 37390117 (-) True XLOC_012269
TCONS_00024224 other upstream 2803042 42825291 ~ 42842863 (-) True XLOC_012313
TCONS_00024257 other upstream 3828513 43850762 ~ 43863624 (-) True XLOC_012331
TCONS_00024261 other upstream 4036562 44058811 ~ 44058927 (-) True XLOC_012333
TCONS_00024269 other upstream 4461241 44483490 ~ 44483617 (-) False XLOC_012339
TCONS_00024283 other upstream 5118080 45140329 ~ 45151793 (-) False XLOC_012349