RNA id: TCONS_00024987


Basic Information

Item Value
RNA id TCONS_00024987
length 956
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_012341
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 44686138 ~ 44688930 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccagtttgtccagtgctCGACATGTACGCCTGTGGACTTGAGATTCAGAGCAGAGTTGACTACGACCACGGgattcgagtccagtgaagaacggttccagaaagcagagcaGTAGTGTTTGCCACTTATCTGCATTATAAAAGACAACATCCAGATGCAGTGTATCAGATGTAAGGATCAGCTCTCGTGCTGCTGTTATTATCAGAAATGTTTTAAGGGTGATCTGGACTCTATATTCCCCATGGCCCTTCATTTATCCCAGATTCTAAAGGGAGAACGCATCTACATTAAAGCTATCCATTCATCAATGTTTAGAAGGTCCGATTTCCTCCGAGGAAGGTTCATTTTACACATGGGAACACTAATCTGAGTTGACATGATAAGCACTGGAACAAAATTGCCGGATATCGTGAAGCTTAAAGGTATTCAGCAATCTCCATTACCGTTGTGTGTTTTGAAAATTGTCATTACTGTAGACCATTTGGCCAGCACCTCGACCGGATATTACATGAATCAACTTCCTGCAATTCCTGCACTCTGTCTGTCCACCTGTTGTTTCTTACATAAATCTGAATAGAAGATTGGGCTACATGGAAGTGGCTCAGTCTCAAGCAAAATCCCCTCTGTATTGCTTTGATATTAAGGTAATTATCGATTTGTATCACTTCCTATTTACGAGACTGAGATGACAGAGTTCCTCACGTCTTAAAAGCTAACAGGTGTTAAACGGTTTCCTCAGCATTCCTCTCTATTGTATGGGCTTgtgatttttgtgtttatttaggaAGTTGCGTTTAGCACGTGCAAGTCTGACGTGCTGTTATTGTCTGACAATTATGCGTCACATGGCGGCAGATTTGGCATAAGGACACTTAACAGGTGCTTGTAAGGCATTTGCTATTGTTCTTGGCACCTTTTGTCACTTCCTGAAAAGtggttttactttaaataaagca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024551 lncRNA downstream 187513 44494082 ~ 44498625 (-) True XLOC_012339
TCONS_00024985 lncRNA downstream 187981 44482087 ~ 44498157 (-) False XLOC_012339
TCONS_00024550 lncRNA downstream 187981 44482087 ~ 44498157 (-) False XLOC_012339
TCONS_00024984 lncRNA downstream 190750 44482087 ~ 44495388 (-) False XLOC_012339
TCONS_00024983 lncRNA downstream 190815 44482087 ~ 44495323 (-) False XLOC_012339
TCONS_00024552 lncRNA upstream 278026 44966956 ~ 44974388 (-) True XLOC_012344
TCONS_00024988 lncRNA upstream 558153 45247083 ~ 45254515 (-) True XLOC_012350
TCONS_00024989 lncRNA upstream 760139 45449069 ~ 45452533 (-) False XLOC_012353
TCONS_00024990 lncRNA upstream 762644 45451574 ~ 45452814 (-) True XLOC_012353
TCONS_00024991 lncRNA upstream 795714 45484644 ~ 45485472 (-) True XLOC_012354
TCONS_00024271 mRNA downstream 101200 44502707 ~ 44584938 (-) True XLOC_012340
TCONS_00024270 mRNA downstream 101327 44502707 ~ 44584811 (-) False XLOC_012340
TCONS_00024268 mRNA downstream 245306 44413770 ~ 44440832 (-) True XLOC_012338
TCONS_00024267 mRNA downstream 283425 44399360 ~ 44402713 (-) True XLOC_012337
TCONS_00024265 mRNA downstream 436418 44245999 ~ 44249720 (-) True XLOC_012335
TCONS_00024272 mRNA upstream 78795 44767725 ~ 44776224 (-) True XLOC_012342
TCONS_00024273 mRNA upstream 272978 44961908 ~ 44968407 (-) False XLOC_012343
TCONS_00024274 mRNA upstream 273022 44961952 ~ 44968177 (-) True XLOC_012343
TCONS_00024275 mRNA upstream 291907 44980837 ~ 45009782 (-) True XLOC_012345
TCONS_00024276 mRNA upstream 341477 45030407 ~ 45040813 (-) True XLOC_012346
TCONS_00024269 other downstream 202521 44483490 ~ 44483617 (-) False XLOC_012339
TCONS_00024261 other downstream 627211 44058811 ~ 44058927 (-) True XLOC_012333
TCONS_00024257 other downstream 822514 43850762 ~ 43863624 (-) True XLOC_012331
TCONS_00024224 other downstream 1843275 42825291 ~ 42842863 (-) True XLOC_012313
TCONS_00024191 other downstream 5044340 39641681 ~ 39641798 (-) True XLOC_012284
TCONS_00024283 other upstream 451399 45140329 ~ 45151793 (-) False XLOC_012349
TCONS_00024305 other upstream 1981077 46670007 ~ 46670103 (-) True XLOC_012361
TCONS_00024306 other upstream 2051276 46740206 ~ 46740303 (-) True XLOC_012364
TCONS_00024308 other upstream 2130818 46819748 ~ 46819845 (-) True XLOC_012370
TCONS_00024319 other upstream 2821350 47510280 ~ 47510396 (-) True XLOC_012384