RNA id: TCONS_00000023


Basic Information

Item Value
RNA id TCONS_00000023
length 428
lncRNA type retained_intron
GC content 0.43
exon number 2
gene id XLOC_000008
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 127250 ~ 134079 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cattcctctgttgaacacagcaGAAGATATTCAGAAGAACATTGCAAAGCAGtagccatcgacttccatagtacatttatttttcctgctatggatgtcGAGGTTTAGCAGTTgccaattaacaaaacaaaaaatataatgaaGACTTGAAGACATTTTGATTGTTCTGTAaatcattcttcagaatatcttgggTGGAACAGCTGAATATACATTTGTGAGTGAACTGTCCTCTTAAATGAAATGTTCtgattgtttttgtgtgtaaaaGACAAGGAGCCCTGCTTGACCAACCCGTGCAGGAACAACGGCACCTGCGTCTATCTGGCCGACAGCTACTACTGCCTGTGCTCTGAGGGCTACGAGGGCAAATACTGCGAAAAAGGCCTCGAGGAGACGCTGAAGTGTCAGTATGTGAACGGAGGCTG

Function

GO:

id name namespace
GO:0030195 negative regulation of blood coagulation biological_process
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021206-10 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Acts upstream of or within negative regulation of blood coagulation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in liver.

Ensembl:

ensembl_id ENSDART00000152248

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000022 lncRNA upstream 1036 127300 ~ 129591 (+) False XLOC_000008
TCONS_00000017 lncRNA upstream 92181 36727 ~ 38446 (+) True XLOC_000005
TCONS_00003001 lncRNA upstream 98274 27814 ~ 32353 (+) False XLOC_000004
TCONS_00000015 lncRNA upstream 98274 31787 ~ 32353 (+) True XLOC_000004
TCONS_00000013 lncRNA upstream 98722 27814 ~ 31905 (+) False XLOC_000004
TCONS_00003002 lncRNA downstream 25571 156792 ~ 157282 (+) True XLOC_000011
TCONS_00002801 lncRNA downstream 90164 221385 ~ 222804 (+) True XLOC_000014
TCONS_00002802 lncRNA downstream 96032 227253 ~ 235533 (+) False XLOC_000015
TCONS_00002803 lncRNA downstream 105179 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002804 lncRNA downstream 106170 237391 ~ 241707 (+) True XLOC_000015
TCONS_00000019 mRNA upstream 5381 119960 ~ 125246 (+) True XLOC_000007
TCONS_00000018 mRNA upstream 11481 109798 ~ 119146 (+) True XLOC_000006
TCONS_00000016 mRNA upstream 91436 36552 ~ 39191 (+) False XLOC_000005
TCONS_00000012 mRNA upstream 96297 27690 ~ 34330 (+) False XLOC_000004
TCONS_00000011 mRNA upstream 103372 25585 ~ 27255 (+) True XLOC_000003
TCONS_00000024 mRNA downstream 4682 135903 ~ 142469 (+) True XLOC_000009
TCONS_00000025 mRNA downstream 13063 144284 ~ 151998 (+) True XLOC_000010
TCONS_00000026 mRNA downstream 26572 157793 ~ 158136 (+) False XLOC_000012
TCONS_00000027 mRNA downstream 26813 158034 ~ 167398 (+) True XLOC_000012
TCONS_00000028 mRNA downstream 45362 176583 ~ 182258 (+) False XLOC_000013
TCONS_00000003 other upstream 117370 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 128819 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 382792 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 406368 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 445223 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 1087470 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

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