RNA id: TCONS_00025519


Basic Information

Item Value
RNA id TCONS_00025519
length 1504
lncRNA type lincRNA
GC content 0.37
exon number 6
gene id XLOC_012792
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 22078144 ~ 22081753 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAGGTTTCCGCCATTTTTTTTTATACCGCATGGATGGGCTCGGCGTGGTGAAGCGGGAATCAATAAAATTGaatcCTTAAGCATGTCAGGAAGATCTGCCAAGCTTTTGGTGATAGTGAGTCAAGATGATTCAAGAAAGTTGCTTTTGCCAGATGGGATTCCCAAATCAGTGGATGCGCTCATTGAAAAGCTCTAGCAGCACTGATGATACAATCATACTCTCAAGAACTGCAAGAAAGATGGCCAGCACTGTTTCAACAAGaggagATTGATGCCGAATTTTTGCACAACACAACCTTACCTTTACAGTTAAGATTTATGGCCTCTTTGGACAGACAGAGCTCTCAGATTCTCCAGGTTATTAGGAGCAAAGGTGGAGTCCTCCGTGAAAAAGCGAAGGACACTATTTAAGTTATGGATCAGAGCCTGGACATAGACATCAGAGGAGAGTGCCTGCTGAAGTGCCTGATCATGTACCTTTGTGAAGATGCAAGCTATCTGATCGAAGAATACCAGgcTGACCAGAGGGAGGAAGCAATGGGTGAATTTGAAAAGAACACCATGACACTTTTTGTGACCCGTGAAAGTGATGCTCTTACTCGTGCACTGGACATTTCGATTGTCATTGACTGTGTGGAAGTACTAAATGAGTTGCCTTCTGTTGCATGTCCCTGCGCCATGATGTTTGGACTCATTTATGCACTGAACTTAAAATATCCCGAAGGACTCAAATATATCTTTGAGACCTTTCAAAAAATAATCATGGACTTGGAGAGTAGACAGATGAGCCGAAGGGTGCCGAACCTGCAGGAGTAAGCAGATGTGCTGAAGAGTGCAGAACCTCTCTTTAAAGCTACTGGAGATAACTTGTATCCTTTGACTCAACTACAGTGTTCTGATTGCGATATATTTTAGATGTTGGACTTCTTCATTTCTTCATCTTCATTATAAAGCATTAAATAGTTTACCAAAACATGAAAGTTCATACATTGTTTACTCATCTTTAAGCTATTCTAagtatttaactttaattaaattagGTTCAGAGAAATTTAATGACAATTATGAGAGAAGTTTAATTTTTCGGTAAACTATTTCATTAAGGTGAAGACTTCTCTTTCAACAGTTGGCTAATTTGTTACAGAgttattaaaaagtatttaattttacACTGCACATTTTAAGCCATTTTTTGGGCCAAACTTGTTTTAACCTCAGAAGAATTCTTAAGGTTTTGTGTAGTCAGTTTTGATTGACTGTTCATGAAAAGGTGTCCAATGATTACTGATTCCTATGGTGAACTTCCATTGTATCCAGGGTCTTTGTATATGGATACTAAAAACTGTTGTAcagtataattttataaaaatgctaTGCACATTGTAGAAATGTTTTATGACATAAATTGTCATGTTTGTTATGTTTACATTGTTAGACAGTGTGTATTTGTACTgtacacattgtaaaaaatgtggTATTGACAAAATAAATTGTCAATAGTT

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0007389 pattern specification process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000134400

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025517 lncRNA upstream 585509 21408803 ~ 21492635 (+) True XLOC_012789
TCONS_00027109 lncRNA upstream 604780 21469636 ~ 21473364 (+) False XLOC_012790
TCONS_00027110 lncRNA upstream 604780 21470448 ~ 21473364 (+) True XLOC_012790
TCONS_00025515 lncRNA upstream 683767 21393366 ~ 21394377 (+) True XLOC_012788
TCONS_00027107 lncRNA upstream 908396 21163424 ~ 21169748 (+) False XLOC_012786
TCONS_00026898 lncRNA downstream 17866 22099619 ~ 22100228 (+) True XLOC_012793
TCONS_00027111 lncRNA downstream 974047 23055800 ~ 23071312 (+) True XLOC_012802
TCONS_00027112 lncRNA downstream 1377176 23458929 ~ 23463541 (+) True XLOC_012805
TCONS_00027113 lncRNA downstream 1729631 23811384 ~ 23828058 (+) True XLOC_012807
TCONS_00027114 lncRNA downstream 1794687 23876440 ~ 23889042 (+) False XLOC_012808
TCONS_00025518 mRNA upstream 57635 21951551 ~ 22020509 (+) True XLOC_012791
TCONS_00025516 mRNA upstream 457328 21408794 ~ 21620816 (+) False XLOC_012789
TCONS_00025514 mRNA upstream 676743 21273749 ~ 21401401 (+) False XLOC_012788
TCONS_00025511 mRNA upstream 932770 21122818 ~ 21145374 (+) False XLOC_012785
TCONS_00025512 mRNA upstream 934704 21122960 ~ 21143440 (+) True XLOC_012785
TCONS_00025520 mRNA downstream 27626 22109379 ~ 22116378 (+) True XLOC_012794
TCONS_00025521 mRNA downstream 41319 22123072 ~ 22127985 (+) True XLOC_012795
TCONS_00025522 mRNA downstream 57171 22138924 ~ 22282675 (+) False XLOC_012796
TCONS_00025523 mRNA downstream 92877 22174630 ~ 22283398 (+) False XLOC_012796
TCONS_00025524 mRNA downstream 135736 22217489 ~ 22282675 (+) False XLOC_012796
TCONS_00025513 other upstream 886360 21191665 ~ 21191784 (+) True XLOC_012787
TCONS_00025507 other upstream 1054543 21021699 ~ 21023601 (+) True XLOC_012781
TCONS_00025461 other upstream 2954065 19123332 ~ 19124079 (+) True XLOC_012754
TCONS_00025449 other upstream 3249659 18827249 ~ 18828485 (+) True XLOC_012745
TCONS_00025448 other upstream 3278092 18799118 ~ 18800052 (+) True XLOC_012744
TCONS_00025547 other downstream 1105666 23187419 ~ 23249572 (+) False XLOC_012803
TCONS_00025560 other downstream 1390393 23472146 ~ 23472260 (+) True XLOC_012806
TCONS_00025562 other downstream 2395773 24477526 ~ 24483172 (+) False XLOC_012809
TCONS_00025565 other downstream 2561234 24642987 ~ 24643102 (+) True XLOC_012811
TCONS_00025566 other downstream 2655481 24737234 ~ 24739896 (+) False XLOC_012812

Expression Profile

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