Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025547 |
| length | 606 |
| RNA type | processed_transcript |
| GC content | 0.49 |
| exon number | 3 |
| gene id | XLOC_012803 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 23187419 ~ 23356077 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0010628 | positive regulation of gene expression | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0042826 | histone deacetylase binding | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-163 | Enables transcription cis-regulatory region binding activity. Acts upstream of or within several processes, including myofibril assembly; positive regulation of macromolecule metabolic process; and somitogenesis. Predicted to be located in nucleus. Is expressed in cardiovascular system; myotome; nervous system; pharyngeal arch; and somite. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human MEF2A (myocyte enhancer factor 2A). |
| ensembl_id | ENSDART00000143977 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00027111 | lncRNA | upstream | 116107 | 23055800 ~ 23071312 (+) | True | XLOC_012802 |
| TCONS_00026898 | lncRNA | upstream | 1087191 | 22099619 ~ 22100228 (+) | True | XLOC_012793 |
| TCONS_00025519 | lncRNA | upstream | 1105666 | 22078144 ~ 22081753 (+) | True | XLOC_012792 |
| TCONS_00025517 | lncRNA | upstream | 1694784 | 21408803 ~ 21492635 (+) | True | XLOC_012789 |
| TCONS_00027109 | lncRNA | upstream | 1714055 | 21469636 ~ 21473364 (+) | False | XLOC_012790 |
| TCONS_00027112 | lncRNA | downstream | 209357 | 23458929 ~ 23463541 (+) | True | XLOC_012805 |
| TCONS_00027113 | lncRNA | downstream | 561812 | 23811384 ~ 23828058 (+) | True | XLOC_012807 |
| TCONS_00027114 | lncRNA | downstream | 626868 | 23876440 ~ 23889042 (+) | False | XLOC_012808 |
| TCONS_00027115 | lncRNA | downstream | 627545 | 23877117 ~ 23889042 (+) | False | XLOC_012808 |
| TCONS_00026900 | lncRNA | downstream | 627545 | 23877117 ~ 23889042 (+) | False | XLOC_012808 |
| TCONS_00025540 | mRNA | upstream | 114754 | 22994113 ~ 23072665 (+) | False | XLOC_012802 |
| TCONS_00025546 | mRNA | upstream | 116107 | 22994427 ~ 23071312 (+) | False | XLOC_012802 |
| TCONS_00025545 | mRNA | upstream | 117822 | 22994427 ~ 23069597 (+) | False | XLOC_012802 |
| TCONS_00025544 | mRNA | upstream | 117822 | 22994427 ~ 23069597 (+) | False | XLOC_012802 |
| TCONS_00025543 | mRNA | upstream | 117924 | 22994427 ~ 23069495 (+) | False | XLOC_012802 |
| TCONS_00025557 | mRNA | downstream | 124111 | 23373683 ~ 23456101 (+) | False | XLOC_012804 |
| TCONS_00025556 | mRNA | downstream | 124111 | 23373683 ~ 23456101 (+) | False | XLOC_012804 |
| TCONS_00025558 | mRNA | downstream | 147438 | 23397010 ~ 23456101 (+) | False | XLOC_012804 |
| TCONS_00025559 | mRNA | downstream | 158501 | 23408073 ~ 23451378 (+) | True | XLOC_012804 |
| TCONS_00025564 | mRNA | downstream | 1312616 | 24562188 ~ 24572673 (+) | True | XLOC_012810 |
| TCONS_00025513 | other | upstream | 1995635 | 21191665 ~ 21191784 (+) | True | XLOC_012787 |
| TCONS_00025507 | other | upstream | 2163818 | 21021699 ~ 21023601 (+) | True | XLOC_012781 |
| TCONS_00025461 | other | upstream | 4063340 | 19123332 ~ 19124079 (+) | True | XLOC_012754 |
| TCONS_00025449 | other | upstream | 4358934 | 18827249 ~ 18828485 (+) | True | XLOC_012745 |
| TCONS_00025448 | other | upstream | 4387367 | 18799118 ~ 18800052 (+) | True | XLOC_012744 |
| TCONS_00025560 | other | downstream | 222574 | 23472146 ~ 23472260 (+) | True | XLOC_012806 |
| TCONS_00025562 | other | downstream | 1227954 | 24477526 ~ 24483172 (+) | False | XLOC_012809 |
| TCONS_00025565 | other | downstream | 1393415 | 24642987 ~ 24643102 (+) | True | XLOC_012811 |
| TCONS_00025566 | other | downstream | 1487662 | 24737234 ~ 24739896 (+) | False | XLOC_012812 |
| TCONS_00025567 | other | downstream | 1487788 | 24737360 ~ 24740047 (+) | False | XLOC_012812 |
