Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025559 |
| length | 1264 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 12 |
| gene id | XLOC_012804 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 23373683 ~ 23456101 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046928 | regulation of neurotransmitter secretion | biological_process |
| GO:0030672 | synaptic vesicle membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040724-63 | Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of neurotransmitter secretion. Predicted to be located in membrane. Predicted to be active in synaptic vesicle membrane. Predicted to be integral component of membrane. Is expressed in several structures, including central nervous system; embryonic structure; notochord; optic cup; and pronephric duct. Orthologous to human MCTP2 (multiple C2 and transmembrane domain containing 2). |
| ensembl_id | ENSDART00000136489 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00027111 | lncRNA | upstream | 336761 | 23055800 ~ 23071312 (+) | True | XLOC_012802 |
| TCONS_00026898 | lncRNA | upstream | 1307845 | 22099619 ~ 22100228 (+) | True | XLOC_012793 |
| TCONS_00025519 | lncRNA | upstream | 1326320 | 22078144 ~ 22081753 (+) | True | XLOC_012792 |
| TCONS_00027109 | lncRNA | upstream | 1934709 | 21469636 ~ 21473364 (+) | False | XLOC_012790 |
| TCONS_00027112 | lncRNA | downstream | 7551 | 23458929 ~ 23463541 (+) | True | XLOC_012805 |
| TCONS_00027113 | lncRNA | downstream | 360006 | 23811384 ~ 23828058 (+) | True | XLOC_012807 |
| TCONS_00027114 | lncRNA | downstream | 425062 | 23876440 ~ 23889042 (+) | False | XLOC_012808 |
| TCONS_00027115 | lncRNA | downstream | 425739 | 23877117 ~ 23889042 (+) | False | XLOC_012808 |
| TCONS_00026900 | lncRNA | downstream | 425739 | 23877117 ~ 23889042 (+) | False | XLOC_012808 |
| TCONS_00025551 | mRNA | upstream | 51996 | 23193820 ~ 23356077 (+) | False | XLOC_012803 |
| TCONS_00025564 | mRNA | downstream | 1110810 | 24562188 ~ 24572673 (+) | True | XLOC_012810 |
| TCONS_00025574 | mRNA | downstream | 1468236 | 24919614 ~ 24932060 (+) | False | XLOC_012813 |
| TCONS_00025575 | mRNA | downstream | 1470209 | 24921587 ~ 24932329 (+) | True | XLOC_012813 |
| TCONS_00025576 | mRNA | downstream | 1551829 | 25003207 ~ 25009666 (+) | False | XLOC_012814 |
| TCONS_00025577 | mRNA | downstream | 1551951 | 25003329 ~ 25006998 (+) | True | XLOC_012814 |
| TCONS_00025547 | other | upstream | 158501 | 23187419 ~ 23249572 (+) | False | XLOC_012803 |
| TCONS_00025513 | other | upstream | 2216289 | 21191665 ~ 21191784 (+) | True | XLOC_012787 |
| TCONS_00025507 | other | upstream | 2384472 | 21021699 ~ 21023601 (+) | True | XLOC_012781 |
| TCONS_00025461 | other | upstream | 4283994 | 19123332 ~ 19124079 (+) | True | XLOC_012754 |
| TCONS_00025449 | other | upstream | 4579588 | 18827249 ~ 18828485 (+) | True | XLOC_012745 |
| TCONS_00025560 | other | downstream | 20768 | 23472146 ~ 23472260 (+) | True | XLOC_012806 |
| TCONS_00025562 | other | downstream | 1026148 | 24477526 ~ 24483172 (+) | False | XLOC_012809 |
| TCONS_00025565 | other | downstream | 1191609 | 24642987 ~ 24643102 (+) | True | XLOC_012811 |
| TCONS_00025566 | other | downstream | 1285856 | 24737234 ~ 24739896 (+) | False | XLOC_012812 |
| TCONS_00025567 | other | downstream | 1285982 | 24737360 ~ 24740047 (+) | False | XLOC_012812 |
