RNA id: TCONS_00027114


Basic Information

Item Value
RNA id TCONS_00027114
length 4921
lncRNA type inter_gene
GC content 0.31
exon number 4
gene id XLOC_012808
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 23876440 ~ 23889042 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgacaaatacatttaaaacagagaGCGTTCACGAGGGAACAAGCAACATACGCGAGAGACTATTGATAAGCCTGGCTCTGTGCCCAAATATGGTGTAATTTGTTCAACATTACCTTCAGTCTTAAAACAACACTATTGTCCTGGGAATTCAGAAGACTCTCTGCTTCTTCATAGGATAGTATAATCGGCGGTCTGGCTGGCAGACTACCATTGCATTGTGTCGGAGCTCTCTGCaggactctgaagactggagaatGCTGAGTGCTGACATCAACACCTAATGCATGACGGGAGGAGGAACATCATGCAAACGTCCCACAATGCAGGGAAGGCAACAGGATCAAAGGGTCAGCTGATAACAAACTGCTTGAATCGTCTACGTATGTATAGTAATTCTGCACCGTTTGCTGTAATGTGTGATTATACATGATAATGGCAATAGCTTTAAGATGACAAGACTAGAAAtgttgaatttaaaaacaaaaatgctgtaCAGTAACTTTTCTGCCAAAAGTAAATAAACTGCTCCTCAATGCACgttgtttgttattattaaatatgaatcTCATATTAACTATGCTACAGATTAAGAGGGTTTTTAAAGATGGGGTGAGATTGCTAAAATGTTTtagcttttgttattaattactatactatactatataattatctaatattaattactaattttatacagttaaagtcagaattattagcccttctggaTTTTTAGCCCCCTGTAttcccccccccaatttctgtttaatggaaataagatttttttaatcccatttctaaacataatagtttttacaattaattacaaataactgatttcttttagatttgccatgatgacagcatataatattttactagatattttaaaagtgccatttaaaggcttaactaggataattaggttaactaggcaagttagggtaattaggcaagtcattgtatatcgatggtttgttctgtagtatcgaaaaaaaacaaaaaacttttgaccctaaaatgatgttaaaaaaacgtaaaattgcttttattttagccgaaataaaacaaattagtctTTCTtgagtagaaaaaaaacattataggaaatacttgaacaattctttgctttgttaaacatcatttggaaaatatttgaaaaaggaaaaataaatcatAGGAGAGGTGATAATTAAGACATTACCATATGGTTGTATAAACAACCCTGTTATTTTGACCATATTTTCATTTTGAAGTTATTCTGATATACTTACAAAACTTTTATGATTAACTTATTTCTTGATATATATTAAGCTACAAGGGATTTATCCTCATCCCCCTCACTCATACCATTCTTATGAAGTCTACATTccacaataaaaatattatgcttAAGTGAATAATGTCACATTGGTTGTAGTAAAACTCTAAATCTTCAATTTATATGGAGCTGTAACTGACAATTTTATTGCATAAAAATGACCAAGTTTCCATTTCTTAGCTGTTATAAACAATTAGAGATGGATATTattttccacacacacacttttcagcATTATACCGTTCTGGATTTAATCACTGGCCACTAGAATAAACTCTAGTTATTAAGgaatataaatgttttcaaaagtaatcaaagAGCCAAAGAGGAAGAGATGGGAACGacagaagagaaagagagagagagagagcgagcgagcgagagagaaaacagagagacagagaaacaGAAATTCAGAGGGTATAGTTGAGGTCTGTAATTGAAAGCAGCTTGTTTTCTAATGTGTACTTCTGAGACTGAGAAGGTTTTAAGTTTGCTTTCGCGCATATACCTCACATGTCTCTGAATATATTACTAGAACTTGTGTTTACATGAAAGGAGGATAAAgcgtgttaaaaaaatatttaaaaaaagaaatgtctgCATGTGAACTAGAAGTGTAACTAGATTCTGTTTAGGCATCCCTTTATATTGTTTACCAATGCAGATCCTAACGTTTGAATTATTCGACTTTTGAAATAAGTAATATTTGCAAAGTTTGCTTATTTAAACAAACGACTCAAATAACAATTCTACTTAATTTTTAAACTCACaggtaagaaaaataaatgattagcATGAATAATGTTATGGCCAGTTGTCAAGCCACATCATGCATATAATATAGTCTATTAAGGGTATAGATACAACAGAGacaataatatgtatttatatttttcatatggccATGAATTGAAATTTTGAATTTGGCCATTAAACATTAGCTTTTATAGGCAAAATTTAATTATAGAGATAAAGTCCCAAAATAATAGACAGTAAATTTGAATCCTCCTGTCACTTAAATACAGATTTACAGTATCTTAGATACATGCTTTacatgaagaaaaaatatattgtttttaacacTGTAAGACAAAAACTGCTTCTTAATATATACAATTTGAatctataaaacataaataaaataaaaaaactaaaaaagctTGTTTATCCCcccaaaacataaaacataatacTTGTTAATCGTCACTATAATATATGCTATAATTTTAGTTCaatactaaactaaaataaacgtaatgtttcaaattaaatttgaaaattCGCAAAATGTAgagaaaattgtttaaaacaatcaaattgccaaaataaaattctaattaaattttaaaatgtactaaaaCTATTAAGAAAAagtgattgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagttggagtcaggattattagcccccctgtttatttcttttcccaatttctgtttaacggggagaacatttctaaacataatagttttcataactcatttctaataactgatttggtttatctttgccatgatgacagtaaataatattttacttgatatttttcaagacacttctattaagcttaaagtgacatttaaaggcataactagctcaattaggttaactaggcaggttagggtaattaggcaagttattgtataacagtgtttttttttttcatgaagactattgagaaaaaaatagagagtaataattttgaccttaaaatggctttaaaaaaataaaactacttttatttaagctgaaaaaaaaaagactttctccagaagaaaaaaatattatcagacatactgtgaacatttccttgctctgttaaacataaatttgggaaatatttaaaaatgaaaaaaaaaaaaaaaaaaaaaatcaaaagggggctaataattcaactataTAGCTATTTCATATATATAGcttattaataaacataaaagaTCAAAATAGATCTATgggggggtgtactcatatatacCCACATACAACCCTCACAGATCTATCTTTATCTTTTATCTTTATTAGTAAGCTCTACGAtattaaatttgtgcatatacatagattagtcagtactgaagccaaatctggagcttatctaacaaaataacttaagacagaggtccaaaaactagtacacccaaatctatatgtaatagaaaaatattaaatacacattttaaaaagaggaaaaatcaagaagcaaaaaaatagaaaattttagttgaaattttgtaggttgtaatatttttgtttgcaaTATTCTGCTTAAATTGTAATATCTTTCaaattctaaatatgtttggtgactaatatattattttaataaatatctctgtttaataaatctgtatatagattacactatatatacatgcatactaCAACTCTCAACAAAAAAGGGAAGAGAGACAGTGCATCAAGTGAGTTTGAAAATTGAACtaaaccgcacacacacacacacacacgctggcaGTGGTAAGGCAGAGAACTCTCAGCGCAAGATTTAATGAGTGCTGAGTTGTTGTGGTATTTGCAACACGGCCAAAAAAGCTCAGCTATGTTCAGGAAGCATGTGAAGTGTCTGCAGTGAAAAAACGTTGTCAAACAAGATTTGGGATCAATTACCCAGACAGAGAGTGTAATGTTTATGCGAGCCCCCTGAAAGACGCGGTGTCCGGGTAAACTTCAGCTGCAGGCCCTGAAGTGCTCATGTAACTGGCTCTTGAGGTTTTCTCTAAGGACATTTGTTTTGTCACCTCCATTAAGGGCTGTTTGGTCCCAACAACATAGCCCTAGTCAGCTTCCTCCTGCCCTGAAGAAATAAGTGTGAAACACAGGATGTTAGTTCATGTTTTGATGATATAATTTGTTcacagaatatcttgttttgtgttcaacagaagaaagatattCCTAGAAGTTTGCAAGCACCTGGGTACATGTAAATGATAAGGATTTGTGAACTATGCAGTAAAAAATCCATTTTCCTATGAACAAAATAAACAGAGATTTATGTATGGAACCCACTGTCACACTTCATAAAATGTCAGTATGCATGGTTTCAGACTGTGTTTTAATGGTTGCATATTATAAGCTTATTTTTCTGTCTGTATGATTAAATTCTGTTATACGTCACACACAGGTTTCCCTactgaccatgttattttataacaaaactTGACCAAATGCATCAATAGTGGAATGAATCAGTGCTACTAGTTCATCAGCTCTGTTGGAGCTCAAACAAAGGTATTTATATGACCACTAAACAGTTGTCGGCTACAGGTCCGCTACAGTGTTCTCTGATTTAAACCACAAAATTAACTAGTTTAAAGTCAAATAGAAAACTTCTGTCAATGATGAGGAAAACAACTGAAACTCTGTGCAACAACGATCAGGTTAGATGGTTTTTCATTTCACAAATCACCAATTATCATGTTTTAACCTATTAACACTAATGAAAGTCACTGATAAATGAGTGATGCTTATATTGAattgtattatgttattaatgTATTACATCTAATAAAGTAGCAACTTAAATGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0005901 caveola cellular_component
GO:0044853 plasma membrane raft cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027113 lncRNA upstream 48382 23811384 ~ 23828058 (+) True XLOC_012807
TCONS_00027112 lncRNA upstream 412899 23458929 ~ 23463541 (+) True XLOC_012805
TCONS_00027111 lncRNA upstream 805128 23055800 ~ 23071312 (+) True XLOC_012802
TCONS_00026898 lncRNA upstream 1776212 22099619 ~ 22100228 (+) True XLOC_012793
TCONS_00025519 lncRNA upstream 1794687 22078144 ~ 22081753 (+) True XLOC_012792
TCONS_00025563 lncRNA downstream 588484 24477526 ~ 24483285 (+) True XLOC_012809
TCONS_00025569 lncRNA downstream 848192 24737234 ~ 24740721 (+) False XLOC_012812
TCONS_00025568 lncRNA downstream 848318 24737360 ~ 24740721 (+) False XLOC_012812
TCONS_00025573 lncRNA downstream 848985 24738027 ~ 24740721 (+) False XLOC_012812
TCONS_00025572 lncRNA downstream 849058 24738100 ~ 24740721 (+) True XLOC_012812
TCONS_00025557 mRNA upstream 420339 23373683 ~ 23456101 (+) False XLOC_012804
TCONS_00025556 mRNA upstream 420339 23373683 ~ 23456101 (+) False XLOC_012804
TCONS_00025558 mRNA upstream 420339 23397010 ~ 23456101 (+) False XLOC_012804
TCONS_00025559 mRNA upstream 425062 23408073 ~ 23451378 (+) True XLOC_012804
TCONS_00025554 mRNA upstream 520363 23249519 ~ 23356077 (+) False XLOC_012803
TCONS_00025564 mRNA downstream 673146 24562188 ~ 24572673 (+) True XLOC_012810
TCONS_00025574 mRNA downstream 1030572 24919614 ~ 24932060 (+) False XLOC_012813
TCONS_00025575 mRNA downstream 1032545 24921587 ~ 24932329 (+) True XLOC_012813
TCONS_00025576 mRNA downstream 1114165 25003207 ~ 25009666 (+) False XLOC_012814
TCONS_00025577 mRNA downstream 1114287 25003329 ~ 25006998 (+) True XLOC_012814
TCONS_00025560 other upstream 404180 23472146 ~ 23472260 (+) True XLOC_012806
TCONS_00025547 other upstream 626868 23187419 ~ 23249572 (+) False XLOC_012803
TCONS_00025513 other upstream 2684656 21191665 ~ 21191784 (+) True XLOC_012787
TCONS_00025507 other upstream 2852839 21021699 ~ 21023601 (+) True XLOC_012781
TCONS_00025461 other upstream 4752361 19123332 ~ 19124079 (+) True XLOC_012754
TCONS_00025562 other downstream 588484 24477526 ~ 24483172 (+) False XLOC_012809
TCONS_00025565 other downstream 753945 24642987 ~ 24643102 (+) True XLOC_012811
TCONS_00025566 other downstream 848192 24737234 ~ 24739896 (+) False XLOC_012812
TCONS_00025567 other downstream 848318 24737360 ~ 24740047 (+) False XLOC_012812
TCONS_00025570 other downstream 848337 24737379 ~ 24740721 (+) False XLOC_012812

Expression Profile

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