RNA id: TCONS_00025571



Basic Information


Item Value
RNA id TCONS_00025571
length 689
RNA type processed_transcript
GC content 0.40
exon number 5
gene id XLOC_012812
representative False

Chromosome Information


Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 24737234 ~ 24740721 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaaaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCATCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGAAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGactctgctgacccagcaacaaagaggagg

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000136958

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00025563 lncRNA upstream 254674 24477526 ~ 24483285 (+) True XLOC_012809
TCONS_00027116 lncRNA upstream 848917 23877392 ~ 23889042 (+) False XLOC_012808
TCONS_00026901 lncRNA downstream 737620 25477794 ~ 25499608 (+) True XLOC_012816
TCONS_00026902 lncRNA downstream 752237 25492411 ~ 25493758 (+) False XLOC_012817
TCONS_00026903 lncRNA downstream 752485 25492659 ~ 25496611 (+) False XLOC_012817
TCONS_00027118 lncRNA downstream 752559 25492733 ~ 25494858 (+) True XLOC_012817
TCONS_00027119 lncRNA downstream 1716507 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00025564 mRNA upstream 165286 24562188 ~ 24572673 (+) True XLOC_012810
TCONS_00025557 mRNA upstream 1281858 23373683 ~ 23456101 (+) False XLOC_012804
TCONS_00025574 mRNA downstream 179440 24919614 ~ 24932060 (+) False XLOC_012813
TCONS_00025575 mRNA downstream 181413 24921587 ~ 24932329 (+) True XLOC_012813
TCONS_00025576 mRNA downstream 263033 25003207 ~ 25009666 (+) False XLOC_012814
TCONS_00025577 mRNA downstream 263155 25003329 ~ 25006998 (+) True XLOC_012814
TCONS_00025578 mRNA downstream 485350 25225524 ~ 25226704 (+) True XLOC_012815
TCONS_00025565 other upstream 94857 24642987 ~ 24643102 (+) True XLOC_012811
TCONS_00025562 other upstream 254787 24477526 ~ 24483172 (+) False XLOC_012809
TCONS_00025560 other upstream 1265699 23472146 ~ 23472260 (+) True XLOC_012806
TCONS_00025547 other upstream 1488387 23187419 ~ 23249572 (+) False XLOC_012803
TCONS_00025513 other upstream 3546175 21191665 ~ 21191784 (+) True XLOC_012787
TCONS_00025586 other downstream 1684965 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025591 other downstream 1689491 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025594 other downstream 2007637 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025607 other downstream 2456036 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025621 other downstream 2996550 27736724 ~ 27736840 (+) True XLOC_012841

Expression Profile


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