RNA id: TCONS_00025573


Basic Information

Item Value
RNA id TCONS_00025573
length 2610
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_012812
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 24737234 ~ 24740721 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCATCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTccatgtatattaaatatctacattgtttaggcatatatgattgtatgagataaaatgcatttattctttcaCTACTATTGTAAGAACAGAAAGAAACGCGttagttttactattactattgtttatgacaaacattaaaaaactacagcataagctcacaaaatattgtggcctaactgtttaaaactaattgttctgggtgttgatagcggccaaccattttttttctttttcagaaagtattttgttttgtctgattttatgacaccttataggccatcaactgcccacattggggtttaggaaattagaactgcttatgctgcttgtctactagtcttaggataagttagaaatgttataaatgtacatttttttgttgtttttatctggtacagctcataggaactccaatcttcccaactgtgagagggccttgctccagtgactgtcagtgtgtacttcattgtttccattagtccctgtatctgtagacctaggtgacagtgggctagagtaaaattttggttttatttaaactaaggcatactgatggcctttttatctcagatttggtcatgcaagtattaatatatcctaaagtatttttatattctttccattggtggaaaagatgttggtataattatttttaatggactgctaagatctcagcagacatttttctgagaTATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGCTTCATCTGTTCTGCTTCCACACTAGATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACGaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagcTCTGTGATGTTCACCTAAGAAAATTAgattagaagatataaactgTTATGCACTTGTTCTGTACTGTTTCATTCCTTTTTCAAACACTGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGAATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAATCACATGAGTTTATATCTGAGATAGATGAACTATGTAATTGTCTTAAACTGATCTACAAGTAAATGCCAAAACTTattggtttacttatttatttatttgtttgtttgtttgtttgtatatgttaacCAGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGAAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGGTATGTACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAActttcttttcataaatatatttcagactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAATAACTTTCCTGCTTGTTTGCTACTGAAAAGTActggtatgtatttgtattttttggcacagacataagcataaggttacccagtccaaaggatattaatatatttttatgttgttgtgttcttcttttaagattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagcaacaaaataactgagaaataaacaacaataagaTGGTGCAATCTAGAGACCTGCAAGGTACCTGCAAGTTTTGGATGGAGCAgagaacatagattttttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaaattaaataaaattgtcatcatctataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025563 lncRNA upstream 254742 24477526 ~ 24483285 (+) True XLOC_012809
TCONS_00027116 lncRNA upstream 848985 23877392 ~ 23889042 (+) False XLOC_012808
TCONS_00026901 lncRNA downstream 737073 25477794 ~ 25499608 (+) True XLOC_012816
TCONS_00026902 lncRNA downstream 751690 25492411 ~ 25493758 (+) False XLOC_012817
TCONS_00026903 lncRNA downstream 751938 25492659 ~ 25496611 (+) False XLOC_012817
TCONS_00027118 lncRNA downstream 752012 25492733 ~ 25494858 (+) True XLOC_012817
TCONS_00027119 lncRNA downstream 1715960 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00025564 mRNA upstream 165354 24562188 ~ 24572673 (+) True XLOC_012810
TCONS_00025557 mRNA upstream 1281926 23373683 ~ 23456101 (+) False XLOC_012804
TCONS_00025574 mRNA downstream 178893 24919614 ~ 24932060 (+) False XLOC_012813
TCONS_00025575 mRNA downstream 180866 24921587 ~ 24932329 (+) True XLOC_012813
TCONS_00025576 mRNA downstream 262486 25003207 ~ 25009666 (+) False XLOC_012814
TCONS_00025577 mRNA downstream 262608 25003329 ~ 25006998 (+) True XLOC_012814
TCONS_00025578 mRNA downstream 484803 25225524 ~ 25226704 (+) True XLOC_012815
TCONS_00025565 other upstream 94925 24642987 ~ 24643102 (+) True XLOC_012811
TCONS_00025562 other upstream 254855 24477526 ~ 24483172 (+) False XLOC_012809
TCONS_00025560 other upstream 1265767 23472146 ~ 23472260 (+) True XLOC_012806
TCONS_00025547 other upstream 1488455 23187419 ~ 23249572 (+) False XLOC_012803
TCONS_00025513 other upstream 3546243 21191665 ~ 21191784 (+) True XLOC_012787
TCONS_00025586 other downstream 1684418 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025591 other downstream 1688944 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025594 other downstream 2007090 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025607 other downstream 2455489 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025621 other downstream 2996003 27736724 ~ 27736840 (+) True XLOC_012841

Expression Profile

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