RNA id: TCONS_00026901


Basic Information

Item Value
RNA id TCONS_00026901
length 689
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id XLOC_012816
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25477794 ~ 25499608 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATGGGACAGCGTGAGTTactagtgtatatacagtataacagaAGAAAAATGGCAAAAACTGTTAGTCAGCTTTTACGTGAAGCAGCTGCTGCATTGGTACAGCAAGAGGAACAGGGGACACAGGAGAACCAAACGTCAAACATCCGTCCCGCAGCAGGAGTCGCGGGCTTCCTTGATGGGCAGAGAAACTGCAGCTCTGGACATTCTCTGGGAGGTGGTGATATGCTGTCTAACTGTGTACCTGTCTGAGAACCTTGAACATCTGATTACACATTACCTGgacACAAGTGGGGAAACGGACCAGCTGGATATTGGAAAGCACATACCAAAAACTGTGATcatacgcacacatacactatacaaacaatttagcttacccaatttacctataccacatttctttggacttgtgggggaaaccggagcacccagaggaaacccacatcaacacggggagaacatgcaaactccacacagaaacaccaactgacccagccagggctcgaaccaacaaccttcttgctgtgaggcgattgtgctggGTGTTTGACAAGCACAGCTTTGAACACTACTTTTAAGAATACTCTTGAAACAGTTTTTGAAGTATTGTTTCTATTAAAGCAGTACATTTGTAAAAGAAATTGCATTTTTTGAACATCTAAAAATGTTTTCAGGAAATGTTTTAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025569 lncRNA upstream 737073 24737234 ~ 24740721 (+) False XLOC_012812
TCONS_00025568 lncRNA upstream 737073 24737360 ~ 24740721 (+) False XLOC_012812
TCONS_00025573 lncRNA upstream 737073 24738027 ~ 24740721 (+) False XLOC_012812
TCONS_00025572 lncRNA upstream 737073 24738100 ~ 24740721 (+) True XLOC_012812
TCONS_00025563 lncRNA upstream 994509 24477526 ~ 24483285 (+) True XLOC_012809
TCONS_00027119 lncRNA downstream 957073 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026904 lncRNA downstream 1497968 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00025618 lncRNA downstream 2071880 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00025634 lncRNA downstream 3657219 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA downstream 3657241 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025578 mRNA upstream 251090 25225524 ~ 25226704 (+) True XLOC_012815
TCONS_00025576 mRNA upstream 468128 25003207 ~ 25009666 (+) False XLOC_012814
TCONS_00025577 mRNA upstream 470796 25003329 ~ 25006998 (+) True XLOC_012814
TCONS_00025575 mRNA upstream 545465 24921587 ~ 24932329 (+) True XLOC_012813
TCONS_00025574 mRNA upstream 545734 24919614 ~ 24932060 (+) False XLOC_012813
TCONS_00025579 mRNA downstream 46619 25546227 ~ 25550960 (+) True XLOC_012818
TCONS_00025580 mRNA downstream 153991 25653599 ~ 25745636 (+) True XLOC_012819
TCONS_00025581 mRNA downstream 252984 25752592 ~ 25754918 (+) True XLOC_012820
TCONS_00025582 mRNA downstream 548520 26048128 ~ 26094678 (+) False XLOC_012821
TCONS_00025583 mRNA downstream 587195 26086803 ~ 26094412 (+) True XLOC_012821
TCONS_00025570 other upstream 737073 24737379 ~ 24740721 (+) False XLOC_012812
TCONS_00025571 other upstream 737620 24737959 ~ 24740174 (+) False XLOC_012812
TCONS_00025567 other upstream 737747 24737360 ~ 24740047 (+) False XLOC_012812
TCONS_00025566 other upstream 737898 24737234 ~ 24739896 (+) False XLOC_012812
TCONS_00025565 other upstream 834692 24642987 ~ 24643102 (+) True XLOC_012811
TCONS_00025586 other downstream 925531 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025591 other downstream 930057 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025594 other downstream 1248203 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025607 other downstream 1696602 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025621 other downstream 2237116 27736724 ~ 27736840 (+) True XLOC_012841

Expression Profile

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