RNA id: TCONS_00026903


Basic Information

Item Value
RNA id TCONS_00026903
length 2047
lncRNA type inter_gene
GC content 0.37
exon number 6
gene id XLOC_012817
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25492411 ~ 25496611 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttaaaacaactacattctcgcctgaaatactcttaaaactacattttgtgaaacattagatgatattttttttaaacttgcggGTCTGCACAGCGGGGTATTGTCCATTGACTTTCACTTAGCATTAGCAGCCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTTTTGCCCGCGCCGTGCATTCATAATGCCAGCTGATTACGTGTGACGGTTAATCTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGATGGAGGATGGACCTGAAGGACGCAAAGAAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGaaaaTGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTGAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcaTGGTGAACCTGACTGAATGCATTCATCTACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAAGAGAATAGAAGTTTGCAGATGATCTAACAGggtgtcacagtggcgcagtgggtagcatgatcgcctcacatcaagaaggttgctggtttgagactcggctgggtcagttggcatttctgtgtggagtttgcatgttgtccccatgttggtgtgggtttcctccgggtgctccggtttcctcgacaagtccaaagacatgcagtacagatgaattggTGGGATGATAATGATGCTCCATACTCAACTCTACAGATAGCTGAAAGTCCGTTTTAAAGGCATTATTACATCCTTCGCTGTTTACTGTGTTTTCAACTTTGCTTATCCACActacataaagaatgcaaaggATGAACATCAGCAACTCCCCAAGATGGAACAACAATTTAAATTTGAACATCAGCAACGGTGTGAAGATGGAAATCCAAAATTACAAGAAAAATCAGTGCAGCTGTCCAAGAGCACTGGTATTGCTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTGGTGCATGCGTTTCGAGTCTGTGCATCAGTAATTTAAGACTAGCAGCTATAGACATTTCAATAACATTGCCCAAATCAACTGAGAAGCACAAGATGAAACAATGCTTAGAATTTTCTCCGCCCAACATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTTTCGTGTGCATGTGAGACCGCTAATGGAGAAGAAATGACACTTTcctaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTAGCAAGTTTTTAATTCTGCTGTTGTATGATTCATATTTCCATGCAAATACAGTAAGAGTTTGACTTTGAATGGGGTGTTATAAACCAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTGATAAActgtttaagaatgtttagaaattTCAAATCAAATGTGTAAAACTTTGATCAAAAGtgtttttgagatctaaaatgaTTATGGGTATACTTTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAATGTAGAATGCAGTGCACTAGCACAAATGTACTTTATTAGGTCTACTGTTGTTTTAGAAAAATTACTTTGTTACATTGGTAAAAATGCTCAGTAAAATGGGATGCactgatgttaaaaaaaataatattaagtttttttgctgtttcataaaatgttttaaaatgtttaagcagcTATTTCTTAAGTTTATGCATCTGGTATGACTTTGTGATAGTTTAAAACTTTCATCTTCTAAAAAGGTGACAATGTAATTGTTTTGAATCTTtcaatgtgtgtttgtgataaaatgttacattttaatgtcttttaaaatgatgtaatgtttaaacattcATCCTGTAAAAATTttgatatttaatatgtttaataaatgtgataaATGAAATTTATTGTGTA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0048731 system development biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0010646 regulation of cell communication biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0023051 regulation of signaling biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025569 lncRNA upstream 751938 24737234 ~ 24740721 (+) False XLOC_012812
TCONS_00025568 lncRNA upstream 751938 24737360 ~ 24740721 (+) False XLOC_012812
TCONS_00025573 lncRNA upstream 751938 24738027 ~ 24740721 (+) False XLOC_012812
TCONS_00025572 lncRNA upstream 751938 24738100 ~ 24740721 (+) True XLOC_012812
TCONS_00025563 lncRNA upstream 1009374 24477526 ~ 24483285 (+) True XLOC_012809
TCONS_00027119 lncRNA downstream 960070 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026904 lncRNA downstream 1500965 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00025618 lncRNA downstream 2074877 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00025634 lncRNA downstream 3660216 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA downstream 3660238 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025578 mRNA upstream 265955 25225524 ~ 25226704 (+) True XLOC_012815
TCONS_00025576 mRNA upstream 482993 25003207 ~ 25009666 (+) False XLOC_012814
TCONS_00025577 mRNA upstream 485661 25003329 ~ 25006998 (+) True XLOC_012814
TCONS_00025575 mRNA upstream 560330 24921587 ~ 24932329 (+) True XLOC_012813
TCONS_00025574 mRNA upstream 560599 24919614 ~ 24932060 (+) False XLOC_012813
TCONS_00025579 mRNA downstream 49616 25546227 ~ 25550960 (+) True XLOC_012818
TCONS_00025580 mRNA downstream 156988 25653599 ~ 25745636 (+) True XLOC_012819
TCONS_00025581 mRNA downstream 255981 25752592 ~ 25754918 (+) True XLOC_012820
TCONS_00025582 mRNA downstream 551517 26048128 ~ 26094678 (+) False XLOC_012821
TCONS_00025583 mRNA downstream 590192 26086803 ~ 26094412 (+) True XLOC_012821
TCONS_00025570 other upstream 751938 24737379 ~ 24740721 (+) False XLOC_012812
TCONS_00025571 other upstream 752485 24737959 ~ 24740174 (+) False XLOC_012812
TCONS_00025567 other upstream 752612 24737360 ~ 24740047 (+) False XLOC_012812
TCONS_00025566 other upstream 752763 24737234 ~ 24739896 (+) False XLOC_012812
TCONS_00025565 other upstream 849557 24642987 ~ 24643102 (+) True XLOC_012811
TCONS_00025586 other downstream 928528 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025591 other downstream 933054 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025594 other downstream 1251200 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025607 other downstream 1699599 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025621 other downstream 2240113 27736724 ~ 27736840 (+) True XLOC_012841

Expression Profile

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