RNA id: TCONS_00025586


Basic Information

Item Value
RNA id TCONS_00025586
length 543
RNA type processed_transcript
GC content 0.40
exon number 4
gene id XLOC_012823
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26422124 ~ 26428525 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACCTTTTAATCTTGTCACATGCTTTTTAGAGGACTCCCGAGTCATGCCTTTGAGTATATCATGTACAACAAAGGTCTTATGACAGAAGATGATTATCCCTACCAGGCTAAAGGGGGTCAATGTAGATTCAAACCACAATTGGCTGCAGCTTTTGTGAAGGAAGTTGTAAACATCACAAAGTATGATGAAATGAGCATGGTGGATGCAGTTGCCAGGTTGAACCCTGTCAGCTTCGCATATGAGGTGACATCTGATTTCATGCACTACAAGGATGGAATTTATACCAGCACTGAGTGTCACAACACTACTGACATGGTAAACCATGCTGTGCTCGCTGTGGGTTATGCTGAGGAGAATGGAACGCCATACTGGATCGTGAAGAACTCCTGGGGAACCAACTGGGGGATTAAAGGgtctgtttaaattttttttaaatatcgtgCTATGCTATAAGGTAAGAATGGTTGGTTTTAAAGGTGCtgcatgtaagtttttgactcttttaaagcataaatttaccataatgtttgcagatatttaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko04142 Lysosome
ko04210 Apoptosis
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-030131-3539 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome. Orthologous to human CTSH (cathepsin H).

Ensembl:

ensembl_id ENSDART00000140111

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026901 lncRNA upstream 925531 25477794 ~ 25499608 (+) True XLOC_012816
TCONS_00026903 lncRNA upstream 928528 25492659 ~ 25496611 (+) False XLOC_012817
TCONS_00027118 lncRNA upstream 930281 25492733 ~ 25494858 (+) True XLOC_012817
TCONS_00026902 lncRNA upstream 931381 25492411 ~ 25493758 (+) False XLOC_012817
TCONS_00025569 lncRNA upstream 1684418 24737234 ~ 24740721 (+) False XLOC_012812
TCONS_00027119 lncRNA downstream 30044 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026904 lncRNA downstream 570939 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00025618 lncRNA downstream 1144851 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00025634 lncRNA downstream 2730190 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA downstream 2730212 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025584 mRNA upstream 6502 26337869 ~ 26418637 (+) True XLOC_012822
TCONS_00025582 mRNA upstream 330461 26048128 ~ 26094678 (+) False XLOC_012821
TCONS_00025583 mRNA upstream 330727 26086803 ~ 26094412 (+) True XLOC_012821
TCONS_00025581 mRNA upstream 670221 25752592 ~ 25754918 (+) True XLOC_012820
TCONS_00025580 mRNA upstream 679503 25653599 ~ 25745636 (+) True XLOC_012819
TCONS_00025588 mRNA downstream 2192 26428829 ~ 26453699 (+) False XLOC_012824
TCONS_00025587 mRNA downstream 2192 26428829 ~ 26453699 (+) False XLOC_012824
TCONS_00025589 mRNA downstream 2192 26428829 ~ 26453729 (+) False XLOC_012824
TCONS_00025590 mRNA downstream 2791 26429428 ~ 26437002 (+) False XLOC_012824
TCONS_00025592 mRNA downstream 293150 26719787 ~ 26728626 (+) True XLOC_012826
TCONS_00025570 other upstream 1684418 24737379 ~ 24740721 (+) False XLOC_012812
TCONS_00025571 other upstream 1684965 24737959 ~ 24740174 (+) False XLOC_012812
TCONS_00025567 other upstream 1685092 24737360 ~ 24740047 (+) False XLOC_012812
TCONS_00025566 other upstream 1685243 24737234 ~ 24739896 (+) False XLOC_012812
TCONS_00025565 other upstream 1782037 24642987 ~ 24643102 (+) True XLOC_012811
TCONS_00025591 other downstream 3028 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025594 other downstream 321174 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025607 other downstream 769573 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025621 other downstream 1310087 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025628 other downstream 1877254 28303891 ~ 28304317 (+) True XLOC_012845

Expression Profile

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