RNA id: TCONS_00025592


Basic Information

Item Value
RNA id TCONS_00025592
length 2083
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_012826
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26719787 ~ 26728626 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAGAACAGGCAAAGAAGCACACTCATGTATAGCTCTCCGATTGGTTACCAAGTGGAACTCTACAATTTGTTTCCGAAAGCCTGGAGACAAAAGTTGATTTTATTCTACAGAAAATCCCACTTTAAGAGACTGGTGGGTTTTTTTGGACTGTTGAAGTTGTTTTGTTTCGGACAATGACATCCAGGAGGCCCATGACCCGCTCTTACTCTGGAAATGGGAGATCGGGAAACCAAAATGGGGAGGATGTCCCATCGCCAAGCGGAAGGTCAGAGAGCCGAAACTACCTCTCCAATGTTAGGCCTGAAAACAGGTATTCAAACTACAGGCCGTCGAGGAGTACCTTATGTACCGTCATGGCTCAGTTGACTGAAGAGACCCAGCCATGTTTTGAGACGACAATTAAATCGAAGGCAGTGTCAGAATCCTGCAATGTTAAATTCTCTTGTGTAGTCACAGGTTACCCGTGCCCTGAGCTGACCTGGTACAAAGATGACATGGAGTTAGATCGATATTGTGGTCTTCCCAAATATGAAATATTTCGCAATGGAAAAACTCACACACTCCACATCTACAACTGTACAGAAGAAGATGCTGCAATTTATCAGGCCTCAGCAAGAAACAGTAAAGGAATCGTCTCCTGTTCCGGGGTGCTCGAGGTGGGGACCATGAGCGAGTACTTGATCCACCAAAGGTTCTTCGCCAAACTTAAGCAGAAAGCTGAAAACAAGCGGCGAGAGATGGAAGAGAGTCGACGTCGTGGTAAGGAGAACATTCAGAAAGAACAACTAAACATTATTAACCAGGAGCGCTTGCTAAGGAAGCGTAGGACTCCTGCCGAGAATGAACAGTCAAGCTCCTCTCCTACAACCCGGGACGAAGAGGAGAACGTGACATCCCAAGGGGTTGAAGAAGAACAGCCTGCAGTCAATGATAAAAATATCACACAACAGGCATCTGTAGGAACTACAGAGAAAACAGAGAATGGGGTTGAGAAACTCAACCACATCTGTGATCCAACGGAGTTGGCTGCTGCAAAGCAGTCTGCCAAAGAGAAACCGGGTGAAAAAAAGATGCGGATTACCAATGGATTTGATGAGGTGGGGATTGTTAGCCCCACCCAGAGCAACATACAACAAGAGGATGGTTATGAAGGAATTAGCTTGGCAAAATACTTAACAGAGTCTGTGCAGTCACCAGCTAGTGAGGAACATCACAGTCCTGCACTCATGGAAATTGATGTTGGTCCTATCAAAGACAAAGAACAAGAGCGAGAGCTTGAGAAAGAAAGGGAACGATTAAAAGAAGAGGAGAGGGAACGATCCAGAGaaacaaagaaagagagagagcgagagaaagtcAGGCAAACTGAACAAGAACAAAAAGCATCTGCATCTACTTCTATAACCAAAGCAGCCTCAAACAAAGACCAAGAACCTCCACACAAGTCGGCTTTAACCTCGGTTTTTCACTCCTTAAAGGACATATTCTTTGGTAAAAGCAAGAAGTCCACAGAGTCATCTGAGTCTACAAGCAGAAGCAGCATTGATAAAGAAATTCCACATGGCAAACACCTTATTTCTTCAAAAACACCTTCTCAAGAGTCTTTAGTTCACAGTTTGGCCTCCAAACAAGAGGCATCAAAATTAATTGAAGAATCTTCTCAAATTAAGAACTTGGAAGTTAAAACAAATAGTTCGGACTACATAAAAAATGCACCAAAGTCAGTTGAGGAATCCTCCCAAATGGTAACCTTGGAAGTAAAATCAAATAGTTTGGCCGTGAAGCAAAATTCACCAAGTTTGGTTGAAGAATCCTTTCAAACAGCAGACCTGGAAGTAAAAACAAATTCTTTACCTCAAATGCAAGACTCAGCCATCCCCAATGATATCATAAACTCCAAACCACCTGAGCATATTACTGAATTATCATTAAACACACCTGAGGCTGGGTCTTCCACCCCTGAAAAACATCCTGAGAACACTGAGGCAACACTTAGACTTTCTGTAGAGCAGAAGGAAATGCCTAAGGAGGACATTAGTCCAGAGGAAGTTGTGCAGATTTCACATTCGTCGCTTTTCAAG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007416 synapse assembly biological_process
GO:0010842 retina layer formation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0045202 synapse cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-48 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in synapse. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy. Orthologous to human ALPK3 (alpha kinase 3).

Ensembl:

ensembl_id ENSDART00000141672

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027119 lncRNA upstream 258360 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026901 lncRNA upstream 1220179 25477794 ~ 25499608 (+) True XLOC_012816
TCONS_00026903 lncRNA upstream 1223176 25492659 ~ 25496611 (+) False XLOC_012817
TCONS_00027118 lncRNA upstream 1224929 25492733 ~ 25494858 (+) True XLOC_012817
TCONS_00026902 lncRNA upstream 1226029 25492411 ~ 25493758 (+) False XLOC_012817
TCONS_00026904 lncRNA downstream 268950 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00025618 lncRNA downstream 842862 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00025634 lncRNA downstream 2428201 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA downstream 2428223 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025646 lncRNA downstream 3401145 30129771 ~ 30131831 (+) False XLOC_012854
TCONS_00025589 mRNA upstream 266058 26428829 ~ 26453729 (+) False XLOC_012824
TCONS_00025588 mRNA upstream 266088 26428829 ~ 26453699 (+) False XLOC_012824
TCONS_00025587 mRNA upstream 266088 26428829 ~ 26453699 (+) False XLOC_012824
TCONS_00025590 mRNA upstream 282785 26429428 ~ 26437002 (+) False XLOC_012824
TCONS_00025585 mRNA upstream 291262 26422124 ~ 26428525 (+) False XLOC_012823
TCONS_00025593 mRNA downstream 15123 26743749 ~ 26752214 (+) False XLOC_012827
TCONS_00025595 mRNA downstream 21890 26750516 ~ 26755230 (+) True XLOC_012827
TCONS_00025596 mRNA downstream 100460 26829086 ~ 26850069 (+) False XLOC_012829
TCONS_00025597 mRNA downstream 100736 26829362 ~ 26849768 (+) True XLOC_012829
TCONS_00025598 mRNA downstream 167368 26895994 ~ 26896826 (+) True XLOC_012830
TCONS_00025591 other upstream 288602 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025586 other upstream 293150 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025570 other upstream 1979066 24737379 ~ 24740721 (+) False XLOC_012812
TCONS_00025571 other upstream 1979613 24737959 ~ 24740174 (+) False XLOC_012812
TCONS_00025567 other upstream 1979740 24737360 ~ 24740047 (+) False XLOC_012812
TCONS_00025594 other downstream 19185 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025607 other downstream 467584 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025621 other downstream 1008098 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025628 other downstream 1575265 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025637 other downstream 2446467 29175093 ~ 29175208 (+) True XLOC_012849

Expression Profile

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