RNA id: TCONS_00025595


Basic Information

Item Value
RNA id TCONS_00025595
length 4297
RNA type mRNA
GC content 0.38
exon number 3
gene id XLOC_012827
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26743749 ~ 26755230 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGATTCCCCTTCATTTGATGTACCGGCCCGCCAATACAATTCCATATGCATCAGTAGAGAGTGACCTGAAGGGTGTGTATGTGAAATACAGTCTGATGGACAACGCCGGAAGACTGATTGCCAAAACAGCCTCTGAGGTGGAGCAGAAGTGTTGCACTTTCCAACACTGGATTCATCAGTGGACCAATGGAAACCTGCTGGTTACCCGGTTAGAAGGTGTCGATACAAAGATTACAAGCATTGAAATCGCCACTAAGTCTAAAGGGTATCAAGGCCTCACTGATAAAGGATCTCCCAAAATCATCGATCAGTTCATTGCTCAACATCAGTGCAACTACTACTGTGGACTGCTGGGCCTTAGACCCTTAAAGCCGATAGATTCTCTCCAGCAGCCTAAAATCAAAACCTCCAGGAGCCCTCTACTGGCCCGAAGAGGAGTTACAGGCTCATCCAGCCCTCAGCTGCAGAAGAAAGGAACCAGCCCACAATCCACCAGAAAAGGCACGTCAAGCCCCAAAGTGGCTAAAAAGACTGGTGAAACTGGGGAGAACAATTCTACTAGCAAGCATAAAACAGTAGAGGTCCCAAAAACTGTCAGGATGAGGTAGAGagaaacaaaatgcaaaacaaggACATACTTTTGTTGATGTGTTAACCAAACTTTAGTTTGGAGTCTGTATAATTATCGAGAGCTACTGTAAATGGACTGTAAATGGATTCTGTCCATTGTCTTTGCACAAAATGAGACAACAAACGCAGAATTATTATAGAAATGAGTCACAAGAaatgtacaaaagctgtcactggacAGGTGCCTTCTCAAAAGGCACACTTTTGTTCTTATTAGGaggtattaattaatatatacacTAATTTGTACTTCTAGGtaaccaatatggaccctttaggtacaacaGTGTAGCGTTTGAAAGTGAAGGCTTTTGTGCTTCTGTGAGTGTGTAAACAGCAGTGTTGGggcaagttacttttaaagtggATATATGGAAATATTGTGTTAAATAAAGTAACTAAATGTTATACTTTGTTACTTTTAAGGAAAGTTATGTTACTTTTATCATCTGGGTTAGACTTGCCTgtttgtaataatataaaaaactcaTAAGTGTAGGTGAAATAAAGGTGAATAAACCTCAGGCtgatgaaaatgtaaattttacagtGTAAGCACAGCTCAGACAAGCCTTTCAGTTGTGCTGTCTTTGTGCAGAGTCGCTATTCAGTTTGCTTTTCATAGCTTCTAATTGATTTAAGGGATACTGAATCTGTTTTTGTACCAGTGAGACAAATAAACAATTTCACATTTAAGCTAGAACAAGCTGCGGTAAGCATCAAGTTTACACATCGCACACAACACATCTCTTGATTTCTGTCAACTTGGTAAGAGCAGTCAGTCATGAAATGAGAAACAAAGTATTTGGGattacttttttgaaaaaaaatactttcttGAAAATGAGAAAGTAATGCTTTACTAGTTACTTGAAAAAGTATTTGATTATGTAACTCATGTTACTTGTAATGTGTAAGCCCCAACACTGGTAAAGAAGTGAATGACTAGAGGTGTTCAgactaatttattattaatgtgaaCTGCTTTGCAGCTTTAAGTCAATTAATATCTTCTAAGAACACTTTTCTTTAGATAAGAACTGAATACATGCTACATCCCCTTTTAAGACTATAACTGGAGATAAATATAAAGCAGGACTCCCTGTCGAACAATGTTCTCAGATAGACTCTGAAACTTTGTTAGGGCTTATTCAAATGTTCCTCTGTCAAGTGTCTGTGGTGGAGGAACCATAAGAGAGAGAGACTCTTTTAAGGATTTGTCAAACATCTGTGATGTGATGTATCTGTTGCAGCTGTGTAGAAATGCAGCCTTTTTTGTAGCTTCACTGAGATGCTTTTTATAGTAGATTGTTCTGCTTTTAAGGGTACGGCCATAAATCTGCATCACCAGCACTCCAATCTTGGTTGTATAAGAGCAAACTTTGAGCGTCATAATGACTGTGTCTTCGTTTTTATCTTACATGTGTCATCCAGAAGAGAGAAATTCATGAGCCTTATTATCGCAGTAAAGATATTCACTGCTGGCCTTTCAGACTGTTTATGCGTCATCACTCTCTAGAACCCTTCAGTTTCACATCAGTGCAttacatgtattttaaataataataaaaaagtaaaaaacaaagttTGCTGTACCATTTTTGCCATTGCAGCCTTTGTGGCAATAACggaattcataaataaaaaatatgtctcaaatacacacacacaactggtAATGCTCtcagtgtgtatagatgtttctattcattcattcattcattcattcaatcattcattcattcattcattttctatttggcttagtcccttaattaataaGAGGTTGCCAcggcagaatgaatcgccaactaatccagcatatgttttatgcagtggatgcccttccagctgcaaccaatcactgggaaacatctatacatactcattcacacacatacactacagacaatttctttggacgtaggggaaaccggagcacccagaggaaacccacgcgaaaatgggaagaatatgcaaacttcacaaggctcgaaccagcgaccttcttgctgtgaggcgatagtgctacccactgcaccaccgtgacacccatcaGATGTTtctaaaatagttaaaataattgtcaaaaaaaactatttagtagCTACTATTtaactatagcccctttcacacagtgatagcgGTACATATTCTGAAAATTCCAGACtttactggtaaaaaaaaaaaaacactgttcacACAGAATTGTTCCAGGAAAGATCATTCACACATCCATGAAGCATCTGATgcagagcttaaaggtaaacaaatgGCGGTTTATCATAAGAATGTTATCGATAttgttttacacagttggcattaagaaggaacattgAAACGTTAACTGactgaaaaatattcaaaggttttgttttcattaacagctaggatgtgaatgcgtctgaatgttctgattggctggagtagacgtcttaCGTCAGCGCATTTCAAACGTCAATGTGCTCTTTTAGTCAATTTTCCTTCTGAATTCACACAGAGCAGAATTCCagcaaaaaatttttttacaacttctctttccagaaaattgccttaatgaatttaccggtatttcaaaaagggcctgttcacacatgatacCTTTCCGGAAAATAATTTTCCAGGAAGGTTTTTATGTGTGAAAGAGCCTTATGTGTACATACTGTATACCAAAACCtactaagtaatgtatttcagattcgcaaaaacgtACACAGCGTcctttagtggatttgtcaaCAAAACGAGTTACGAAGCTTACACGGggcaatatattttatattccacaaaaatgtaggctgaggggTGTATATTTAATGAGACTGGGTTAAAATGTTTCATAGTTGAGTTGTTTGTCAATTCAATACTGCTGTTCAGCTGGTCAGTAAGGATAGTTTAGGGTTCCTAACACAACATAGTAAACAGATCTCAGTTGAGAGGAAGAACCAAGACAACAGCAGGTCAACCTGATGTATCATTAAAGTCAaaacacatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaattacgaACGAACAAACACGAATGTAGAAGTACCAATGGATTAATAAAAGCAACTGATTAAACAAAATGAGGAGCAGAATGGTTTGACTTATTAAAAGTGCAGTAATTTCAGAGCTGTTGGTGTCAAGCATCCTGCCCATTTCTTTCCCTCATtggacattatttattttttgtaatgtatTTGTAACAGTCACCCAAgttccagcctgtgcagattgctGGTATATACACTGATCGCTAAAAAAACTACAAATCAGTTGTTACATGGACTACAGATCCTgtcatgcatcacacacacacacacacctgttatgGATCTCAtttgattacactcacacagctgggagctgttTTAAGACGGATtagttggactatttatacagcacacaaacTTCTGTCTTTTTGTACAGtattgtgaacattatgacgttttttccttgccttgtctGGTCGTGTTTTTGACCGtcaccttgtttgtttgtttacgttgcctgctgcctgcctgtactgactaTGACCTGTATATTTGACTAggactctggatttgcctacaTAGATCTATTTGCTCCAGATTGTGACCGTTgattgcctgaccatctctgtataataaaccctgc

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007416 synapse assembly biological_process
GO:0010842 retina layer formation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0045202 synapse cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-48 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in synapse. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy. Orthologous to human ALPK3 (alpha kinase 3).

Ensembl:

ensembl_id ENSDART00000110843

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027119 lncRNA upstream 289089 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026901 lncRNA upstream 1250908 25477794 ~ 25499608 (+) True XLOC_012816
TCONS_00026904 lncRNA downstream 242346 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00025618 lncRNA downstream 816258 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00025634 lncRNA downstream 2401597 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA downstream 2401619 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025646 lncRNA downstream 3374541 30129771 ~ 30131831 (+) False XLOC_012854
TCONS_00025592 mRNA upstream 21890 26719787 ~ 26728626 (+) True XLOC_012826
TCONS_00025589 mRNA upstream 296787 26428829 ~ 26453729 (+) False XLOC_012824
TCONS_00025588 mRNA upstream 296817 26428829 ~ 26453699 (+) False XLOC_012824
TCONS_00025596 mRNA downstream 73856 26829086 ~ 26850069 (+) False XLOC_012829
TCONS_00025597 mRNA downstream 74132 26829362 ~ 26849768 (+) True XLOC_012829
TCONS_00025598 mRNA downstream 140764 26895994 ~ 26896826 (+) True XLOC_012830
TCONS_00025599 mRNA downstream 144086 26899316 ~ 26920132 (+) True XLOC_012831
TCONS_00025601 mRNA downstream 245620 27000850 ~ 27078219 (+) False XLOC_012833
TCONS_00025594 other upstream 2589 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025591 other upstream 319331 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025586 other upstream 323879 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025570 other upstream 2009795 24737379 ~ 24740721 (+) False XLOC_012812
TCONS_00025571 other upstream 2010342 24737959 ~ 24740174 (+) False XLOC_012812
TCONS_00025607 other downstream 440980 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025621 other downstream 981494 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025628 other downstream 1548661 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025637 other downstream 2419863 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025648 other downstream 3374569 30129799 ~ 30130552 (+) False XLOC_012854

Expression Profile

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