RNA id: TCONS_00025596


Basic Information

Item Value
RNA id TCONS_00025596
length 2092
RNA type mRNA
GC content 0.43
exon number 17
gene id XLOC_012829
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26829086 ~ 26850069 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTGTCACAGAGAACGCAGAATGAAGGACAAAGAAGATTTGCAGTTGACGGACGTCTCGTATGGGAACGAACAAGGCGTGGATAATCCAGTCTTTGTGAAGGAGGATACATTACCAGATGACCTGAGTGACAGTGACAAAGAGTCAGAGAAGGATTCAAAGTCAGAGAAGGAGTCAAGCTCATGCATGAGCAAAGCATGTCTACCCATCACAGTCACAGAGACCTTCTTCAAGACTCACtccaaaataatcaaatatattgTGTTGGCAATCCTTGCTGCAGGTTATCTGGCGTACTTCATTTATGCCTGTTATTTAAGCTTCCAGAGGGCTCTTGCATTGGTGGTCCTCACTTGTCTGGGAGTTTTCATCCTCGTGTGCGAACTAGTGTTTCGGTACAAGGGTGACAGCATCAAGAGGTGCTTCAAGCCTGTGCAGAGATGTTTTAGATCCAATATGAAATGGATGAAATGGGTATTCATAGTAATTGTGGTTGGTCTGTTGGTGGCATGGCTGGCAGTCGACACACGAAAGCGCCCAGAGCAGCTCATCTCTTTTGGTGGCGTCTGTCTGTTCATTGTTGCAATATTTCTCTTCTCTGCACACCGAACTGCAGTGAGATGGAGCACTGTCTTCTGGGGTCTTGGTTTACAGTTTGCCATTGGTCTGTTTGTTATTAGGACAGAGCCTGGTCTCGTTGCATTCGAATGGCTCGGAAAGcaagttcagatttttctgGACTACACAAAAGCTGGTTCCGGGTTTGTGTTTGGAAACCTCATTGACAACATATTTGCATTCCAGGCTCTGCCTATAGTGGTGTTCTTCAGCAGTGTAATGTCAGTTCTGTACTACCTAGGGGTGATGCAGTGGGTCATCACAAAGATCTCCTGGGTAATGCAAGTAACAATGGGAACATCCTCCACAGAGACTCTCAGTGTAGCAGGAAACATCTTTGTTGGCCAGACAGAGGCTCCCCTTCTGATCCGTCCCTATCTAAAGGACATGACCAAATCTGAGATTCATGCAGTGATGACTGGTGGATTTGCAACCATTGCTGGAAGTGTAATGGGTGCTTTCATCTCATTCGGGATTGATGCCTCGTCTTTGATTTCTGCTTCAGTGATGGCTGCTCCATGTGCTTTAGCCATCTCCAAACTGTCCTACCCTGAAACGGAAAAGAGCAAGTTCACATCTAAAAGTCAAATTAAAGTGGACAGTGGAGGTGAGCAGAACGTGTTGGAAGCTGTTAGCGGCGGTGCGTCTGCTTCTATAGGGCTTGTGGCCAACATTGCTGCTAACCTGATTGCTTTTCTTGCCATCTTGGGCTTCATTAATGCAACTCTAAGATGGTTGGGGGGCATGGTGGGATACCCAGATGTCACCTTTGAGGTTCGGTCAGAAATCATCTGCACTTATGCCCTGTGTGGCTTTGCTAATTTCAGCTCTCTTGGAATTGTGATTGGAGGCCTGTCCTCTATTTGTCCACCAAAGAAGGGAGTAATTTCTTCTTTAGTGCTCAGAGCCTTGTTCACAGGCACATGTGTTTCTCTGATCAATGCCTGTATTGCTGGTATCCTTTTCGTTCCTCCCCTAGACTGTGTGGGTCTGCTTCAAAATGCAGTCTTCGAACCTACTACAGCCAACCTTGAAACTTGCTGTTATGATCTTTTTAAAAGcactgTCAACAATGGAACGGTTTCTTTTGAGGGGTCCTGGAGTGTAGTGGCAAATGCcacaatttattttgaaaactgtTGTGGCCTCTATAATGCAACTGTGTGCATGTAGTTAGGCCAAGAGGtaacatacagtataatatagCAATGCAAAACTCTCTCAACTAAATATactagtatttattaaattatcacaTTATGAAATGTTTGCTCAGTTGATAGATGtacaaaatgtatttgattttatttgctcatttattcaaaCCTAAATTCCTCGTTTATGTAGCCCATATGTGAGAGCAATTTGTGTgcaagtattttatttttcttctacaAATTCTGTTGTTTTGTCTCCTGTAAATGTTGTAATTGTTGTAAGAATTTACATCCAATTACATTCTTATCAATGGCAG

Function

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0015293 symporter activity molecular_function
GO:0005337 nucleoside transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-117 Predicted to enable nucleoside:sodium symporter activity. Predicted to be involved in nucleoside transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC28A1 (solute carrier family 28 member 1).

Ensembl:

ensembl_id ENSDART00000098356

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027119 lncRNA upstream 367659 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026901 lncRNA upstream 1329478 25477794 ~ 25499608 (+) True XLOC_012816
TCONS_00026904 lncRNA downstream 147507 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00025618 lncRNA downstream 721419 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00025634 lncRNA downstream 2306758 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA downstream 2306780 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025646 lncRNA downstream 3279702 30129771 ~ 30131831 (+) False XLOC_012854
TCONS_00025595 mRNA upstream 73856 26750516 ~ 26755230 (+) True XLOC_012827
TCONS_00025593 mRNA upstream 76872 26743749 ~ 26752214 (+) False XLOC_012827
TCONS_00025592 mRNA upstream 100460 26719787 ~ 26728626 (+) True XLOC_012826
TCONS_00025589 mRNA upstream 375357 26428829 ~ 26453729 (+) False XLOC_012824
TCONS_00025588 mRNA upstream 375387 26428829 ~ 26453699 (+) False XLOC_012824
TCONS_00025598 mRNA downstream 45925 26895994 ~ 26896826 (+) True XLOC_012830
TCONS_00025599 mRNA downstream 49247 26899316 ~ 26920132 (+) True XLOC_012831
TCONS_00025601 mRNA downstream 150781 27000850 ~ 27078219 (+) False XLOC_012833
TCONS_00025600 mRNA downstream 150781 27000850 ~ 27078219 (+) False XLOC_012833
TCONS_00025602 mRNA downstream 151046 27001115 ~ 27073137 (+) False XLOC_012833
TCONS_00025594 other upstream 81159 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025591 other upstream 397901 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025586 other upstream 402449 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025570 other upstream 2088365 24737379 ~ 24740721 (+) False XLOC_012812
TCONS_00025607 other downstream 346141 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025621 other downstream 886655 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025628 other downstream 1453822 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025637 other downstream 2325024 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025648 other downstream 3279730 30129799 ~ 30130552 (+) False XLOC_012854

Expression Profile

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