RNA id: TCONS_00025600


Basic Information

Item Value
RNA id TCONS_00025600
length 9132
RNA type mRNA
GC content 0.45
exon number 34
gene id XLOC_012833
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 27000850 ~ 27085828 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctattaaaaaagtGCAAAATGCTCAAAATGGCAGAATTGCTCGGATGGAGGAGCACGCAAGCATGCGTAGCCTACAAGTTTAAACGTTTAAACCCTAaacatttttaacagcagatggcatcgACGCTCTATTGTAGTTTACACAGTTTAGTTCAGAAACCAAAGAACCGTCATGACTTTTCTGGCCTCTAGGTGTCGCTGTTTCTTCGTGATCTTTCATCTCTGATCTTCAGCAGGAACTGACGTTTGCGTCTACGACTACATGAGCAAATTTTCCAGCTGGAGGAAAATGTCCAGCGTCAAAGATCGGAGAGTCTGAAGGCACCTGTTGTAAAGTTCCCATCAGAACCCAGTGGTCTCCTCATGTACATCGCAAGGCAGAGCTGACACCATGGCCCACATATCCAGTGGCAATGGGTTTAAGTTTGACAGGCCAGCCTCTCCGGGGGTGGTCCGGCCAAAAGGAATTGTGGGGAAGGAAGAGGCTTTACGCATGGAGGTAGAGGCCTTCGATAAAATTAAGCGCGAGAAAAGGCACACACTCCCAGTCACAGCCTCTTCTGTTAATCCCCTTCCCAATCCAACAGCGCAAACATCCAGCAGCCGGCCAGAGAAAGACCTTATTGTATTCTGCGAATCAGAAACACAGAAGAAGGAGCAAAAAGACAACTTTGAGGACATCGATTTGGAGAACCTGACAAAGGAGGAGCTGGAAAAGCTGCTTCTGGATGACAGTTTTGGTGCAAACAAAATGACAAGACCTTCCTCTTTGCTAGGTTGCAATCTCAGCGCATCATATCCTGGCGGACATGCCTTCAACCCCTCTTCGTTCCACTGGACACCCACTCCAACGCATGCACAGACTCCCATCTTCCCCTCTGCTCCATTCGCCAAGCCTCCTTGCTCTTTCCAGAATGGCTTTAGTCCAGCAATGTCTCCATTTATTCCACCGACCCCCTTTCTCTCCTTTACTCCCATCCAACCACCTGCTGCTCTGGTCTACTCGCAGCCTGCCGTCACCCCAGAGATGGCCAAGCTGTTTGACAAGATTGCCAGCACTTCGGAATACTTGAAGAACGGCAGGTCCTCTAGCATGGAAACCGAATCGGCAAGTGTCAAGTCTCTGGAGCCCCTACCTCTGCCCTCAGAACCTCCTAACATCAGCCGATTTGAATGGCTGGACTTGGACCCTCTCAACAAGCGCAAGGAGGTGGAGGTCGAGGAGACACCTGCTGTTTCAAGCTGTCCTTTTATTGAGGAGTCTGGGAAAGCTAAAGACCCGTGGGATGCGGTTCTTCAGGATGAGCATGAAACTGTAGATAATGGCAGTCCCACCGCAGAGGAAAAGAGCAAGGCAACTCAACCCAGAAGAGCATCCACAGGGGCGGCTGTAACAAAAAGCCAATCCCTCAGTATATCTGCAAACTCAACGAATCAAAGCACAGGCAAACAGGTCAATAAGGGAAGCACAAATGTACTGTCCAAGTACTCTGCCTTACAGGAGAAGGAAGCCCAGAATCTAGAAGTTGTAGCATTCTGTGAAGACATTTCAAAactgAGGTCAAAGTTCCCACACGATGACCTGTCTACCAACCCTGGCTATGTTCTCAGCCCTGTGATCACGCAGAGGGATGCAGGAGGGGACAATGGGGGCAGTGTGAAAGTGTCCATTGAGATTTCTGATTCTCAACAGCCTGTAACGTTTACTTGCGATGTGACTTCTCCAGTGGACTTGCTCATAATGCAGGCTTTGTGTTGGGTTCATGATGACCTGAACCAGGTGGACATCAATAGCTACGTTCTCAAGGTCTGCGGACAGGAGGAGGTCCTTCAGAATAAACACAGTCTAGGCAGTCATGAGTACGTGCAGAACTGCAGGAAGTGGGAATCAGAGATCAAACTACAGCTCCTGTTTCTTAGCACAATGAGAAGAGATCTGGCCCGAACTGCAGAAGATGACATCTCGCCCATTGATTTGGAGAAATACCTTGGTCTAGTGGAGAGGCCATTTAAAGAGGCAGTCACAAGAGAAGGCCTTGCTGAATATCTAGAAGGCTTTCATAAGCAAGTCAATCTCTGCCTTCAGAATGAGAACAACCAATATAAAACAGTGGACAATGTGGTTCAGTCTGTTAAGAATCTGTGCTGTGCTCTGGATGAAGTTGAGACACCAGCCATCACTGATGCCGTCAAGAGGCTCAAGCGCTCTGTCAACCTTCCTAGAACACGCTCACCAGAGGCTGGTGCCACATCTTCCGGAGGTTCAGCTAATGGTTACTCTAGCCCTGTAGAGGAGAGTTTAGCAGTGCTCACAGATGCTGTCTATGAACTCGCCAAGCTCTACCTTCAGTCTTTCTGCCCGATTAGCCCTGGTTTCATGATAGAAGAGCACAAAGAAGATGAGAGGGACAGCAAAGAGGCCTCGGGCACCACTGAACACTTACAGTTCACACTGTTTGCCGTTCATGGCATTCCTGCTACCTGGGTCAGCAGTTTTGAAAAATACTACCTGATGTGTGCCCTGACCCATAACAACAGGAATCTCTTCAAACCTGTCCAGTCCAAAAAAGTGGGAACATACAAGAGTTTCTTCTACCACATCAAATGGGATGAATTaataaactTCCCTATTTCAGTGTCGCTGTTACCACTGGAGGCTATGCTTAGTCTTTCTCTCTATGGGGTCCTCAGTCAGAATGCAAACAACTCACCAGATTCCAACAAGCAACGGAAAGGTCCAGAACTTTTGGGAAAAGTTTCCATGCCTCTGTTTGACTTCAGGAGGGTTCTGTCCAGAGGCAGTAAACTGCTGAGTTTGTGGACTTCTCCTCAAGCCCTTCAGCCTGGAGCTGCAGGCAAAGGGAGGAATCCTACAGAAAAGATCATACTGCAGGTTGACTTCCCCAGTCCAGCGGTGGACGTGCTCTATGTTGGTCCTCAGGAGAACGGCTGCCCCAATCCTCAGTCTCTAGACCCACTTGATCAAGACGATCGAAGTGAGATAGAAAAGCTGTGCGCACGAGCATCTACTTTCGGACTGTCACGGGCGGACAGACAGCTGCTTTGGGACCAGAGGTACTATTGTCGGGAATATGAATACAGTTTGCCGAAAATCCTGGCCAGCGCTCCCAGCTGGGACTGGGGCAGTATGGGGGAAATCCACGCACTTCTGCACCACTGGCCTGCTCTGTCACCCGTTTCAGCTCTTGAGCTCCTTGAATCCAAGTTTGCCGACACAGAGGTGAGGAAAGTGGCTGTGAGCTGGATCCAGAGCAGCAGTGATGATGAGCTGGCTGATTATCTCCCCCAGCTAgtgcagGCAGTGAAGTTCGAGTGTCACCTTAACAATGCCTTGGTGAAGTTTCTGCTGTCTCGAGCTCTGGGAAATGTCAACATTGCACATTATCTTTACTGGCTGCTGAGGGATGCAGTGCAGGACCCGGCGTTTGGTCAGCGTTATGAGCGGATCCTCTGTGTGCTGCTGTGTCTGTGTGGGACCGGACTGAGGGCTGAGCTGGAGAAGCAGACCCGACTTGTGCAGCTGCTTGGAGCTCTGGCTGAAAAGGTTCGGCAGGCGAGCAGCTCAACCCGACAGGTGGTTCTCCTCGAGGGTCTAGAGAGGGTTCAGTCTTTCTTCCAGAAGAACAGCTGTCGACTCCCTATTAGCCCCAGTCTGGTGGCAAAAGAGCTCAATATCAAGGTCTGCTCCTTTTTCAATTCCAACGCTGTACCTCTAAAGATCGCACTGGTTAACGCAGATCCGCTGGGAGATGAGATTAACGTCATGTTTAAGGTTGGAGAAGACCTGCGGCAGGACATGTTGGCACTACAGATGATTCGGATTATGGATCGGATCTGGCTTCAGGAAGGACTCGACCTGCGTATTGTTAACTTTAAATGCATCTCTACTGGGAAAGATAAAGGCATGGTGGAGTTGGTACCATCTTCTGAAACGCTGAGAAAGATTCAGGTGGAGTATGGAGTGACGGGTTCCTTCAAGGACAAACCTCTTGCTGAGTGGCTTCGCAAGTATAACCCTGCTGAGGATGAGTATGAGAAGGCGTCTGAGAATTTTATCTACACCTGTGCTGGATGCTGTGTGGCCACTTACATCCTCGGCATCTGCGATCGTCACAACGACAACATCATGCTGCGCTCCACTGGCCACATGTTCCACATAGACTTCGGGAAGTTCCTGGGTCACGCACAAATGATTGGGAGTTTTAAAAGGGACCGAGCACCGTTTGTCTTAACCTCTGACATGGCTTATGTCATCAATGGAGGCGAAAGACCCACTAGTCGCTTTCAGCTGTTCGTTGACCTTTGCTCGCAAGCCTACAACCTGATCCGCAAACACTCCAACCTCTTCCTCAACCTGCTATCTCTGATGACACAATCAGGTTTACCCGAGCTGACCGGAGTCCAAGATTTGAAGTATGTGTATGATGCTCTTCAGCCTCAGACTACAGATGCAGAGGCTACCATTTTCTTCACAAGGTTGATTGAATCCAGTCTGGGCAGTGTGGCTACAAAGTTTAATTTCTTTATCCACAATCTGGCTCAGTTGCGTTTCTCTGGCCTTCCCTCCAATGATGAACCCATCCTGTCGTTTGCTCCTCGGACATACACTATGAAGCAAGACGGCAAGATTCGGGACGCCtctgtgttttcatttcaaaagaGATATAACCCAGACAAGCACTATacgTATGTCATTCGGATTCTAAGGGAAGGTCAGAGCGAGCCACAGTTTGTTTTCCGCACATTTGATGAGTTTCAGGAATTGCACAACAAATTGACCATCCTTTTTCAGTTGTGGAAGCTGCCAGGGTTTCCCAGTAAGATGGTGCTGGGACGCACACACATCAAGGATGTGGCATCCAAGAGAAAGGTTGAATTGAATAGTTATGTGCACAATCTGATGAGGAGTTCAACAGAGGTCGCCCAGTGTGATCTGATCTACACCTTCTTCCACCCTATCGCAAGAGATGACAAGACTGAAGGGGTTGATACCCTATCAAAAACTCCAGacaTGCCTCCAGTGAGTCCCACCACAGGCCGTGTGGAGGGTGAGGTGAAGCTGTCAGTGTCCTACAGAAACAGCACACTTTTCATCATGGTCATGCACATTAAAGACCTGATGTCCAATGACGGAGCAGACCCAAACCCTTATGTGAAAACATACCTTCTCCCAGACCCCCACAAAACTTCCAAACGCAAAACAAAGATTGCGAGGAAGACAAGGAACCCAACATTTAATGAAATGCTGGTGTATAGCGGTTACAGTAAGGAAACACTGAAGCAAAGGGAACTTCAACTCAGTGTGCTCAGTGCCGAGTCTCTGCGAGAGAACTGCTATTTGGGAGGAATAACCCTCTGCCTTAAAGACTTTGACCTCAGCCGAGAGACAGTCAAGTGGTACAAACTCACCACGGTGCCCTACTTCTAGATCCGGCCATCCCTCTACACCAGTCTGCCCTGAAAAGATGACTGTATCAGTACATCAGAAGTCAATGGTCACCAATACACCAGTCAGAATATCTTCATTTATTTCATACAGGTTTAATTTAACTCCGTGGGTAAGTGGCGGATTCAATTTTTATGTTTGGTTGAACTACTGTAAAGCTTTTGACCCTCACATAATAATGATTTCTGCTGAGCTGGTGTCTGTGTGAACATTAGCATTCATTAGAGGTGTGACACAGGTGCTTTATCATTAGCAGTAAAAAGTGAAATGTCAAAAAGGCCTGACCTCAGATCTGCCAGCGTTTCTGTTGCGCCTCATTAAACAGGCTGTTGCTGAGAGAAAGCATCTGCAGGAAAACAGAAAAGCTGTCCTGCCAATGCACAAATTTGCTTAGTCTCCAAGGTGAGAGCTCATTGATGAACAAGTATGCATGATTCAACAGGAGTTCAACATTTTGCATATTTCAGGATTAGAATAGATTAATTCTGTCAGTTTACACACTTTGTAGGTTGCTGGTGTCTTaaaaaatagttcacccaaaaatgtaaagttCCCGTGAAGTTAAATGTGCGTCTCtctattcgatgtttgacgtaatttcaagtgaaacatgaagagagggtgtaACATAGAGCATCTCTTTTTAAAAACCATCTAATagcatcacagctctgccagtgagagtgcttGATCAAGCACATCAACTGAAAAGCAAAAGAATGTGGAGCATAtctgatactagagagcattttattggtcaagatttgatgaaaaaaaaataagtatgaggtggcatgaaaaaaaaaattgttgatccatttaggcggaagtgaccaACGGGAGGCTTTGAATGTTTatccacagccatatcactctgcagcccaagactggttactcattgaagctaagcagggctgagcctggttagtacctggaccACATGGGTAAACTAGGTTGCTGTGGTGTTAGTGAGGGCAGCAGGGTGCTCTCATCTATggtctaatgccccagtataatgaaggggacactatactgtcagtgagcgtatctttcggatgagacgttaaagcaAGGTCCTGACCCTCTGAGTTCagtaaaaatcccatggcacttctcgtgttCTGGCCAAATTCTCCCCATCAGCCCTTACTGATCATGGCCTCCAAATCATCCCCATTCACTGAAATGGCTCTatcacctatagctggtgtgtgctgagcgcactggcgccgttgtcctgtggctggcatcgcatcatctaagtggatgctacacactggtggtggagagacccccctcatgattgtaaatcgctttgggtgtatggccatacacaataactgtgctatataaatacacattacattcaTATCAGGTTCATATCTTCTAAATGCAGATTTTGGAACACACTAGCTTATCGATAttcttaaaactaacatactgatagATTTGAAGTATATAAGAGTTTAGATGCGAAAACCTTTAAATGCCAGTTAAATGCCAGTTAAAGAATAAGTTATTTTCCTGTTCTTTAAAGTGAAAtttctcaacataaacaaatgaagttgaaaaaaatttcatttagaggtttttgcgtCTGAACATTTAAGTTAACATCCATAATTTAGTCACCAGGCATCTCGTATATGACTTTTTTCTGTCAGTTGAGCACAGTCAGagtattatacatatttatttaggcTTTTTCATACTGTATGTTGGGTGGCTTTTAATTTTAAAGCTTCCAAAAGTGTATAAATCTGTCGTCAAACTAACCCATACGCCACCAGGAGGTTAAAGCATGCCTTATGAAGTGGACCTTTGTGTTTTCATTTAacaaatattcattaattaattttctttttagcgTAGGctctttattaattcagggtcgccacagcagaatgaactgccaacttatccagcacatgttttatgcagcggatgcccttccagctgcaacccatcattgggaaacatgcatacacactcgtacactacggacaatttagcctacccaattcacctgtaccacatgttttttggactgtgggggaaaccggagcagccagaggaaactcacgtgaacacagggagaacatgcaaactacacacagaaacgcccagctgaggcttgaaccagcgaccttcttgttgtgaggccacagcactacctactgcgccaccgcgtccatttaacaaatatatttatcatttttcaGACAACTAATTGGTTATAGTTACTTTTTACAAACAGTAACTTATTTGTTAGTAACTGAATtacacattataaaagcaactaCCAGGGAAGGtaacttacttttttaaaaacttatccaccaatattaaatttgtaaaataaaatgaacttcAACTAAGTAAAtctttattataaaacattgtacactatTCTGTGCTATAATAATGTTGCTGTGCGACAATGTGAGAAATGCATATCACAtctaatatatttttgtaaatattgtaattaGTGGACCAATAAAATATTTAGACCTTTAATATTTATTGCACTTATATGGTATATTCATtaaagtattgtttttatatcCAAACTAAATGTGACTTAATCATTTTTTCACAATCCATTTTTGGGATTACTATGATAAATATACTATCAAAGTATTAGAGCACAAACTATAGTGTCTTTGAACCATGCTATAGTAtaagtgtattatactgtgtaTAGTATTGACTACCTTTTGGTAACGAATGCATCAGCATACTGTAGTACTAACTATGGTGACCtgttaaaatgtgtttgtgttgtatactttagtttttactatagtaatctGTGCTGcattgtagtgtaatataccctataattgtaaaaacaacaacaacaacagtattgTAGTAATATACTTATCCTAGGCtgttttaagctggattttttttttggcagggatcagtaaaaaaaaatccatatggGTCCACATGACGCTGACTGGAGTGCTTAAAACTGGAAACCACAAAAACTTCCCATTAATTCGAAAATGTATCATATAAAATGAGTAACAAAGCAAGTGTGTGCCTCAAGAAACGTGTATAGAGTAAGCCTGTAGTAGAATGATGTAAGAGGAGAAACATGTATACCTGTGGTTTCATGACTTGTCACATGGGACAACAAACCATGCGTCACTTGCCTACACGATCAAATGGGCGTGGTTTATTTTAAAACGGGGCGGTGTTAATGTGAGTGACACACAAGCCATCAAATCAGAATGTCGCCTGGTTGCTGGCTGGAGATATTTGTTTATGTTGCAGCGCTCTCATAAGTTTTAGCTGTTTGTCATCGACGCATGTTCGTTCGGAGCTGCTGTAAACCTGACTTGGCGATCATGAGGACCTCAGCAGCTTTCGCTCGGAGTTAACACTCACTTATCTGCGAAGATGTGTTTAGCGAACTTCAGAAATCAGCCGATACTTTACTACCGAGAGAACAAACTAAGGGACGAGTATCAGAATACGTGACAGGGTATTTCTTCGTTTGAGGATGGAGAGGAGCGCGTCGGAGCGAACCGCGCTGCGGCGGTTCGGGGACAGCGGGATGATGCTCCTGCCCTGGACCAAACAGATCCTGACGGTTGTGTGGGAGCACCTGCGACTGCTGGTTCAGGTCATCTGCTGCACACTCATGACGG

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0016477 cell migration biological_process
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process biological_process
GO:0001525 angiogenesis biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0014065 phosphatidylinositol 3-kinase signaling biological_process
GO:0016310 phosphorylation biological_process
GO:0005886 plasma membrane cellular_component
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0035005 1-phosphatidylinositol-4-phosphate 3-kinase activity molecular_function
GO:0052742 phosphatidylinositol kinase activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0016303 1-phosphatidylinositol-3-kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030328-39 Predicted to enable 1-phosphatidylinositol-3-kinase activity and 1-phosphatidylinositol-4-phosphate 3-kinase activity. Acts upstream of or within angiogenesis. Predicted to be part of phosphatidylinositol 3-kinase complex. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including axis; heart tube; nervous system; notochord; and pectoral fin musculature. Orthologous to human PIK3C2A (phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha).

Ensembl:

ensembl_id ENSDART00000086131

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026904 lncRNA upstream 2261 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00027119 lncRNA upstream 539423 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026903 lncRNA upstream 1504239 25492659 ~ 25496611 (+) False XLOC_012817
TCONS_00027118 lncRNA upstream 1505992 25492733 ~ 25494858 (+) True XLOC_012817
TCONS_00026902 lncRNA upstream 1507092 25492411 ~ 25493758 (+) False XLOC_012817
TCONS_00025618 lncRNA downstream 493269 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00025634 lncRNA downstream 2078608 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA downstream 2078630 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025646 lncRNA downstream 3051552 30129771 ~ 30131831 (+) False XLOC_012854
TCONS_00025647 lncRNA downstream 3051577 30129796 ~ 30131831 (+) False XLOC_012854
TCONS_00025599 mRNA upstream 80718 26899316 ~ 26920132 (+) True XLOC_012831
TCONS_00025598 mRNA upstream 104024 26895994 ~ 26896826 (+) True XLOC_012830
TCONS_00025596 mRNA upstream 150781 26829086 ~ 26850069 (+) False XLOC_012829
TCONS_00025597 mRNA upstream 151082 26829362 ~ 26849768 (+) True XLOC_012829
TCONS_00025595 mRNA upstream 245620 26750516 ~ 26755230 (+) True XLOC_012827
TCONS_00025606 mRNA downstream 22877 27101096 ~ 27307129 (+) False XLOC_012834
TCONS_00025605 mRNA downstream 22877 27101096 ~ 27307129 (+) False XLOC_012834
TCONS_00025608 mRNA downstream 140518 27218737 ~ 27306096 (+) False XLOC_012834
TCONS_00025609 mRNA downstream 222481 27300700 ~ 27306096 (+) True XLOC_012834
TCONS_00025610 mRNA downstream 240370 27318589 ~ 27336157 (+) True XLOC_012836
TCONS_00025594 other upstream 252923 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025591 other upstream 569665 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025586 other upstream 574213 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025570 other upstream 2260129 24737379 ~ 24740721 (+) False XLOC_012812
TCONS_00025607 other downstream 117991 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025621 other downstream 658505 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025628 other downstream 1225672 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025637 other downstream 2096874 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025648 other downstream 3051580 30129799 ~ 30130552 (+) False XLOC_012854

Expression Profile

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