RNA id: TCONS_00025604


Basic Information

Item Value
RNA id TCONS_00025604
length 2374
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_012833
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 27000850 ~ 27085828 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTTTAGCTGTTTGTCATCGACGCATGTTCGTTCGGAGCTGCTGTAAACCTGACTTGGCGATCATGAGGACCTCAGCAGCTTTCGCTCGGAGTTAACACTCACTTATCTGCGAAGATGTGTTTAGCGAACTTCAGAAATCAGCCGATACTTTACTACCGAGAGAACAAACTAAGGGACGAGTATCAGAATACGTGACAGGGTATTTCTTCGTTTGAGGATGGAGAGGAGCGCGTCGGAGCGAACCGCGCTGCGGCGGTTCGGGGACAGCGGGATGATGCTCCTGCCCTGGACCAAACAGATCCTGACGGTTGTGTGGGAGCACCTGCGACTGCTGGTTCAGGTCATCTGCTGCACACTCATGACGGCCAGATGTTCCGGTTTGAAGTTCATCTAAGAATTACAGACGAGACAGGGCAACACATTCAGCACATGACAAGTAGCACAGGAGACCCCTCTGACAGTTTCCTGCTCTCATCCCtgtttgaaaacaacacaaacattgtGGTGGGGGGTTCCAGTCCGCTTTCCAAATTCGGCAGAGACCCATTTGACGTGAGCTCCCACTCCAGAGCCGTCTTGTCCAGTCTAGTCAGTGATGAACTCTGTTGCTCTTTGGTGGACGACCTCGTGTCCCATGCGACCGAGTGTCTCAACGACACAGATGATCTCTACATTGGAGATCACTCTGTGTGGAAACATGGATATGACTGGACTGTATTAGGAGGTTCTGAGAGGAAGTGCGGTTCAGAAAGCACTTGTACGTTCAGCGCACACGTGGCAGGGTTTACGAAGGAGTTTGTAAAGCATCAGAAACCCATTAGCGATCCTGGTTCCTGTGCTTTATCAAAGGAGAATGTTCAGTCTTCACGTCAAGTACAGTCCATCAGTCATTTCTCAGACAGCGAGTTCAGCTGGGGCAGCACAGACAGCTCTTGTTTCGAAGGAGAACGTGAGGAAAGCGACAAACTCTGGGATCTTCTGACCAAGTCGACTGATCCATATCACCCGCTGCACTTCACAGCTTGCTTGTCCACTGTAGTTACTGAAAAACCCAAACCAGAGGTGGTTTCAAAAGCAGAAAGTCCCATTGCATCTCAGTCCACTGTGTCTACCAGCTCAGATTCTTCCAAACCAGGTTctgaagatgaagaagaagaggcCTTATGGAGATCCCTTTCCCAAAATGACGACCCGTACCACCCTTTGAATTTCAGAGCACCTCTTCAAAGCTCATCTGTGACTCCAGTACCTTCCAAACATGATTCACCCAGCAACAATATGCAAAATACACCAATCAGACCCCTTAAATCTTCAAGGCGCTCAAAGCCGGCTTTACTGCCAAACAAAGTGGCTCGCCATTGCTGCCGCAAATTATCAGTTGAGACATTATCAGTGGTGCCATGGAAAAGACATGTTGGTGTGACATCTGTTCAAGGCAACCAGAAGAGAAGTCCCAAATTAAAGAAGGTGAAATTTTCTCCCGTCGTACAAGTTCACAAGATGCGAGCATGGTCCTTTGCTCTTCAAGCATCACGTAAGGGACCGTGGGAGGAGCTGGCGCGGGACAGAGACCGTTTCCGGAAGAGAATCGGTGACACTGAGAAGGCCATTGGGTACTGCTTTAGTTTGTCAAACAGGGAAAAGATGCGGGCCTATAGAGACACTGTACAGAAGAAATGACCAGCCTCTCAGTCATTTTCATGATTGTAACTATTGATCTTCAGTTCCCAGGCAGGACTCCAGACTCATGCATTGACTTAAATTGACAATCATACCTCACCGCTGTGTCCCAACACACTGTACTTTGACCGCCACTGAATGTTCATTTAGTTTGAATGCCTTACTGATGTTTTACTGTGACCAagcacacatttatttttaacacaacTTGTAGATATGTTGAAACAGTAGactagtgttttttattttaagagttagttcacccagaaatgaataTGCCGTCCTGATTTACTCATCTTTTTTGAAatgacacaaaagaagaaatgttttttttttctttcatacaaTGAAAGGTACTGGAACCTATCGTTGTTTTAGACTTTCATTGTAAAGGCAAAACAGCTAAACCGTTCTTCAAAAGATCTTCTCTTGTGTTTGACAAAAGACCTGGAATAAATTGAGGATGAGTAAACCATAACAGCATTTTTAGGTTGTTTATTCAAGTGGTTTAAAATGGCTTGAAATTAGACAACTGTTTGTCATTCACTATTGTTAttcaatttttttgaaaaatgcaaaaaagaTAAACCGAGTTACAGTGCAACTAAATATTTACACACGCGTATACATTTGTTCAAACACACCTATATTCAAAAGGTCATCGAGAACTgcttaacataaaatatatattt

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0016477 cell migration biological_process
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process biological_process
GO:0001525 angiogenesis biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0014065 phosphatidylinositol 3-kinase signaling biological_process
GO:0016310 phosphorylation biological_process
GO:0005886 plasma membrane cellular_component
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0035005 1-phosphatidylinositol-4-phosphate 3-kinase activity molecular_function
GO:0052742 phosphatidylinositol kinase activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0016303 1-phosphatidylinositol-3-kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030829-40 Predicted to enable protein phosphatase regulator activity. Predicted to be involved in positive regulation of phosphoprotein phosphatase activity and response to endoplasmic reticulum stress. Predicted to be part of protein phosphatase type 1 complex. Predicted to be active in endoplasmic reticulum. Is expressed in olfactory placode and peripheral olfactory organ. Orthologous to human PPP1R15B (protein phosphatase 1 regulatory subunit 15B).

Ensembl:

ensembl_id ENSDART00000098334

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026904 lncRNA upstream 79264 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00027119 lncRNA upstream 616426 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026903 lncRNA upstream 1581242 25492659 ~ 25496611 (+) False XLOC_012817
TCONS_00027118 lncRNA upstream 1582995 25492733 ~ 25494858 (+) True XLOC_012817
TCONS_00026902 lncRNA upstream 1584095 25492411 ~ 25493758 (+) False XLOC_012817
TCONS_00025618 lncRNA downstream 485660 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00025634 lncRNA downstream 2070999 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA downstream 2071021 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025646 lncRNA downstream 3043943 30129771 ~ 30131831 (+) False XLOC_012854
TCONS_00025647 lncRNA downstream 3043968 30129796 ~ 30131831 (+) False XLOC_012854
TCONS_00025602 mRNA upstream 4716 27001115 ~ 27073137 (+) False XLOC_012833
TCONS_00025599 mRNA upstream 157721 26899316 ~ 26920132 (+) True XLOC_012831
TCONS_00025598 mRNA upstream 181027 26895994 ~ 26896826 (+) True XLOC_012830
TCONS_00025596 mRNA upstream 227784 26829086 ~ 26850069 (+) False XLOC_012829
TCONS_00025606 mRNA downstream 15268 27101096 ~ 27307129 (+) False XLOC_012834
TCONS_00025605 mRNA downstream 15268 27101096 ~ 27307129 (+) False XLOC_012834
TCONS_00025608 mRNA downstream 132909 27218737 ~ 27306096 (+) False XLOC_012834
TCONS_00025609 mRNA downstream 214872 27300700 ~ 27306096 (+) True XLOC_012834
TCONS_00025610 mRNA downstream 232761 27318589 ~ 27336157 (+) True XLOC_012836
TCONS_00025594 other upstream 329926 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025591 other upstream 646668 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025586 other upstream 651216 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025570 other upstream 2337132 24737379 ~ 24740721 (+) False XLOC_012812
TCONS_00025607 other downstream 110382 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025621 other downstream 650896 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025628 other downstream 1218063 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025637 other downstream 2089265 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025648 other downstream 3043971 30129799 ~ 30130552 (+) False XLOC_012854

Expression Profile

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