RNA id: TCONS_00025609


Basic Information

Item Value
RNA id TCONS_00025609
length 1319
RNA type mRNA
GC content 0.36
exon number 4
gene id XLOC_012834
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 27101096 ~ 27307129 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggaataataaactcataatggtgaatggtgagtaaatgttccttttgtgtgaactattcctttgacCTCACGGGAAACCAAAAACATACAAATGCCTCCAGCCAAAATGAGATTTTCCAATACATAAAGAAATTCCAAATTTGTTTGGACTAGCCTCCTCAAGTCACTTTGTGTCTGGCCTATGTTTGGCTTTAAATCCAAGGCTCATTTCCAGAGGCAATGTTGTATTTTTTGCCTAAATGTTGTGTATTGTTATCTTCGCCCTAGTAGGGATGGGAAAATCTCATTGATTTGCAGCGACCCAAACAGGCCTTGTTTGTTGAACCCTATCGGCCGGCATCAGATGAATGGTTGACGGTTAGGGCTCGGCCAGTTATGGAATTGGAACTGGAGCCTTTGGACTTTGAGTTTGATATTACCAGAGAGCTGTCAACACCACAGAAAGTGTGGATTCCACAGCGACTCATAGACGACGAGTCAGATGAAGACCTGAGTCCTGAAGAGAAGGAGACTCGATCTCGCACTGTAGCAAAGATAAAAACCCTCCTGTCCAAATCCAGCATGAGGTCTTCAGAGCAGATGGACTTTAGCGATCTGGATTTGGCTCTTCAACAGCAGGAGAGGATCATGAGTGTTCCTCGAGCTCTCGCCACTGAAGCCTCCATCAAAAGGAGGCAGGTCACAGccaAAGCCATGTCCGAGGGTTAATTCTTGTGAAGCTTTACTGTTAgcccaaaaatgattattttgatATTCATAATTCACCTTCAGTCATTCAGGTTCTCAGGTGTTTTGGACTTTTtatatgcaatgtttttttttttatttttttattcattttatcgtggcatttaatatgttttatcaGCTACACTATCAGTTTTACAGTTCTGCCATCAGAAGTTGCTTTCTAATTTAGcactttgttatttttgttaaacatACAGTTTCATTTAATTATGACTTAAGGTGCTTAATCATTTGCAGTgttgtatattatataatattatacatataaatgctgtttaaagtattttaatatcaaatgtttataattaatttaatcatatttaatgttttttattattcattttacttttgcATGTTTTGTCAGCTACCCTTTCAGATGTACTTTTCATACATTaccgtttttttatttaaagaatcaTGAAATTGATTTAAGGTACTCAATTGTTTGCTGTGTGgcattgttaaaaaataataacagtgtTTAATATAGATTTGAATGTGAAACGCATCTTTCATTCAGGAAATTTTATGAAAACTGTCACCCTTAAGTCATTAAAGTCattttcaaa

Function

GO:

id name namespace
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0045218 zonula adherens maintenance biological_process
GO:0090136 epithelial cell-cell adhesion biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0005813 centrosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005915 zonula adherens cellular_component
GO:0030054 cell junction cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070097 delta-catenin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-75 Predicted to enable delta-catenin binding activity. Acts upstream of or within cardiac muscle cell differentiation and regulation of heart contraction. Predicted to be located in centrosome and zonula adherens. Is expressed in cardiovascular system and tail bud. Orthologous to human PLEKHA7 (pleckstrin homology domain containing A7).

Ensembl:

ensembl_id ENSDART00000140444

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026904 lncRNA upstream 302111 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00027119 lncRNA upstream 839273 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026903 lncRNA upstream 1804089 25492659 ~ 25496611 (+) False XLOC_012817
TCONS_00027118 lncRNA upstream 1805842 25492733 ~ 25494858 (+) True XLOC_012817
TCONS_00026902 lncRNA upstream 1806942 25492411 ~ 25493758 (+) False XLOC_012817
TCONS_00025618 lncRNA downstream 265392 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00025634 lncRNA downstream 1850731 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA downstream 1850753 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025646 lncRNA downstream 2823675 30129771 ~ 30131831 (+) False XLOC_012854
TCONS_00025647 lncRNA downstream 2823700 30129796 ~ 30131831 (+) False XLOC_012854
TCONS_00025604 mRNA upstream 214872 27077853 ~ 27085828 (+) True XLOC_012833
TCONS_00025603 mRNA upstream 215095 27077853 ~ 27085605 (+) False XLOC_012833
TCONS_00025601 mRNA upstream 222481 27000850 ~ 27078219 (+) False XLOC_012833
TCONS_00025610 mRNA downstream 12493 27318589 ~ 27336157 (+) True XLOC_012836
TCONS_00025611 mRNA downstream 31898 27337994 ~ 27358871 (+) True XLOC_012837
TCONS_00025612 mRNA downstream 133584 27439680 ~ 27570030 (+) False XLOC_012838
TCONS_00025613 mRNA downstream 183499 27489595 ~ 27570030 (+) False XLOC_012838
TCONS_00025615 mRNA downstream 205880 27511976 ~ 27566897 (+) False XLOC_012838
TCONS_00025607 other upstream 104374 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025594 other upstream 552773 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025591 other upstream 869515 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025586 other upstream 874063 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025571 other upstream 2560526 24737959 ~ 24740174 (+) False XLOC_012812
TCONS_00025621 other downstream 430628 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025628 other downstream 997795 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025637 other downstream 1868997 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025648 other downstream 2823703 30129799 ~ 30130552 (+) False XLOC_012854
TCONS_00025649 other downstream 2823703 30129799 ~ 30131831 (+) True XLOC_012854

Expression Profile

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