RNA id: TCONS_00025618


Basic Information

Item Value
RNA id TCONS_00025618
length 756
lncRNA type retained_intron
GC content 0.38
exon number 5
gene id XLOC_012839
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 27571448 ~ 27626391 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACTGTTAGTAGCACAACAGCGAACTAACTGACAGCTGCTCCACGGATCTTCGCTGCGACTTGACACAAAACAGAGCTGCAATCATGGGGAAAGGATGCATCGCCGCCACCAAATACTTCCTGTTCTTGTTCAACCTCCTCTTCTTTATTCTTGGAGCTGTAATCAtgggctttggactgtgggtcaGGCTGGATAGTCAGAGTTTCCTCACGGTTTTGCAAGAGTCTTCTACATCGCTGAAAGTTGGAGCCTACATCTTAATTGGGATTGGATCTCTGTCTATGCTCATGGGATTCCTGGGTTGCATTGGTGCCATTTATGAGATCCGCTGCCTGCTTGGATTGTATTTCACATGCCTGCTCCTCATCCTCATCGCTCAGGTCACAGCCGCTGTTCTCATCTACTTCCAGAGAGACCTAGTAGGTTACACTACAGTGTTCaagtattatttatatactaatacaatatttattcatatttagaattaacttttttttattatttatttttgacttattttacttgtgtttgtttttccttttacaTGTAGTTTAAGTAATTagcttttttctatttaatttataatttttttacactattttagtaatatttatagGGATGTCCTGATGTCAGGACATGATGGATgtccaagtcatttgattttgagtatctactgatacccttctataatacataaaaaagaataaagatgaccgaagaaacagatccaggatgttccttattgtttatttaa

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2857 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human CD82 (CD82 molecule).

Ensembl:

ensembl_id ENSDART00000134714

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026904 lncRNA upstream 572899 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00027119 lncRNA upstream 1110061 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026901 lncRNA upstream 2071880 25477794 ~ 25499608 (+) True XLOC_012816
TCONS_00025634 lncRNA downstream 1542124 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA downstream 1542146 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025646 lncRNA downstream 2515068 30129771 ~ 30131831 (+) False XLOC_012854
TCONS_00025647 lncRNA downstream 2515093 30129796 ~ 30131831 (+) False XLOC_012854
TCONS_00026905 lncRNA downstream 3458540 31073243 ~ 31074445 (+) False XLOC_012863
TCONS_00025612 mRNA upstream 1458 27439680 ~ 27570030 (+) False XLOC_012838
TCONS_00025613 mRNA upstream 1458 27489595 ~ 27570030 (+) False XLOC_012838
TCONS_00025615 mRNA upstream 4591 27511976 ~ 27566897 (+) False XLOC_012838
TCONS_00025614 mRNA upstream 4591 27511976 ~ 27566897 (+) False XLOC_012838
TCONS_00025616 mRNA upstream 5227 27515640 ~ 27566261 (+) True XLOC_012838
TCONS_00025620 mRNA downstream 117582 27732285 ~ 27813164 (+) False XLOC_012840
TCONS_00025622 mRNA downstream 123646 27738349 ~ 27812386 (+) True XLOC_012840
TCONS_00025623 mRNA downstream 207153 27821856 ~ 27822787 (+) True XLOC_012842
TCONS_00025624 mRNA downstream 289812 27904515 ~ 27993797 (+) False XLOC_012843
TCONS_00025625 mRNA downstream 312136 27926839 ~ 27993556 (+) True XLOC_012843
TCONS_00025607 other upstream 375162 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025594 other upstream 823561 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025591 other upstream 1140303 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025586 other upstream 1144851 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025570 other upstream 2830767 24737379 ~ 24740721 (+) False XLOC_012812
TCONS_00025621 other downstream 122021 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025628 other downstream 689188 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025637 other downstream 1560390 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025648 other downstream 2515096 30129799 ~ 30130552 (+) False XLOC_012854
TCONS_00025649 other downstream 2515096 30129799 ~ 30131831 (+) True XLOC_012854

Expression Profile

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