RNA id: TCONS_00025628


Basic Information

Item Value
RNA id TCONS_00025628
length 348
RNA type processed_transcript
GC content 0.58
exon number 2
gene id XLOC_012845
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 28303891 ~ 28304317 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGGATCGCCGCAAGTTGGCGCAATTCATGTGCCATGACACTTCAACCTCAGATAAGTTCTACGCACTTCACCTCGGACCTCTCCAAGCACGCGAGCGCCGCAGACTCTTTGAAAGGgccctggtggaggaggaggaggaggaggatggggaggCAGCGGGCACTGAAAGCCCCCCGCGGAAAGGGCGCAAGAGGACAGAGACTTCCGTCTCTCACCTGgagggaaccagcaggaggacgctgccatggcgccctgccagggggaaaagccagggcgctcgcccgctcgaacaaacagaagactctgaatcgtcctgaataaatattgtacaacttaacggtcaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142152

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025618 lncRNA upstream 689188 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00026904 lncRNA upstream 1305302 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00027119 lncRNA upstream 1842464 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026903 lncRNA upstream 2807280 25492659 ~ 25496611 (+) False XLOC_012817
TCONS_00025634 lncRNA downstream 852510 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA downstream 852532 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025646 lncRNA downstream 1825454 30129771 ~ 30131831 (+) False XLOC_012854
TCONS_00025647 lncRNA downstream 1825479 30129796 ~ 30131831 (+) False XLOC_012854
TCONS_00026905 lncRNA downstream 2768926 31073243 ~ 31074445 (+) False XLOC_012863
TCONS_00025626 mRNA upstream 147635 28102620 ~ 28156256 (+) False XLOC_012844
TCONS_00025627 mRNA upstream 196592 28106139 ~ 28107299 (+) True XLOC_012844
TCONS_00025624 mRNA upstream 310094 27904515 ~ 27993797 (+) False XLOC_012843
TCONS_00025625 mRNA upstream 310335 27926839 ~ 27993556 (+) True XLOC_012843
TCONS_00025623 mRNA upstream 481104 27821856 ~ 27822787 (+) True XLOC_012842
TCONS_00025629 mRNA downstream 260323 28564640 ~ 28880191 (+) True XLOC_012846
TCONS_00025630 mRNA downstream 684056 28988373 ~ 29060842 (+) True XLOC_012847
TCONS_00025632 mRNA downstream 841364 29145681 ~ 29193708 (+) False XLOC_012848
TCONS_00025631 mRNA downstream 841364 29145681 ~ 29193708 (+) False XLOC_012848
TCONS_00025633 mRNA downstream 852510 29156827 ~ 29168546 (+) False XLOC_012848
TCONS_00025621 other upstream 567051 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025607 other upstream 1107565 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025594 other upstream 1555964 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025591 other upstream 1872706 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025586 other upstream 1877254 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025637 other downstream 870776 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025648 other downstream 1825482 30129799 ~ 30130552 (+) False XLOC_012854
TCONS_00025649 other downstream 1825482 30129799 ~ 30131831 (+) True XLOC_012854
TCONS_00025666 other downstream 2694309 30998626 ~ 31006058 (+) False XLOC_012861
TCONS_00025679 other downstream 3541187 31845504 ~ 31846556 (+) True XLOC_012868

Expression Profile

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