RNA id: TCONS_00025635


Basic Information

Item Value
RNA id TCONS_00025635
length 369
lncRNA type retained_intron
GC content 0.47
exon number 2
gene id XLOC_012848
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 29145681 ~ 29193708 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAGTTTTTCAGCAGAAGTTCTCTAGAGTCACAGAAGCTGGGGTTGATGGAGGAAGTGTCCTGTCTGAAACTGAAGCTGGGGGACATGGAGGACAAACACATCAACTGTGCCGAGAGACAACATAAAGCTGAGAGTGTAGTGAATCTGATTAGTGAGCTCCAGGAGCAGATGTGTAGGATTCGTCAGGAGATCTCAAGTAAAAACCCAGAGAAGCCAGCAGAGATGATCCCAGAGGAGGGCTATGGCAGTGAGCCAGCACAAGCTTCTCAGACTGAACCAAAGCCGACGGTGAGTCTGAGATCTGGACATTTAGACAAATGTAAACATTCTGGAACTGTGGCCATTGTGGAAAAGAAATACTTGGAAG

Function

GO:

id name namespace
GO:0007528 neuromuscular junction development biological_process
GO:0050808 synapse organization biological_process
GO:0048786 presynaptic active zone cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-277 Predicted to be involved in neuromuscular junction development. Predicted to be active in presynaptic active zone. Orthologous to human PPFIBP2 (PPFIA binding protein 2).

Ensembl:

ensembl_id ENSDART00000147361

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025618 lncRNA upstream 1542146 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00026904 lncRNA upstream 2158260 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00027119 lncRNA upstream 2695422 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026903 lncRNA upstream 3660238 25492659 ~ 25496611 (+) False XLOC_012817
TCONS_00025646 lncRNA downstream 966657 30129771 ~ 30131831 (+) False XLOC_012854
TCONS_00025647 lncRNA downstream 966682 30129796 ~ 30131831 (+) False XLOC_012854
TCONS_00026905 lncRNA downstream 1910129 31073243 ~ 31074445 (+) False XLOC_012863
TCONS_00027120 lncRNA downstream 1910129 31073243 ~ 31075016 (+) False XLOC_012863
TCONS_00026906 lncRNA downstream 1910148 31073262 ~ 31075016 (+) False XLOC_012863
TCONS_00025630 mRNA upstream 96007 28988373 ~ 29060842 (+) True XLOC_012847
TCONS_00025629 mRNA upstream 276658 28564640 ~ 28880191 (+) True XLOC_012846
TCONS_00025626 mRNA upstream 1000593 28102620 ~ 28156256 (+) False XLOC_012844
TCONS_00025627 mRNA upstream 1049550 28106139 ~ 28107299 (+) True XLOC_012844
TCONS_00025625 mRNA upstream 1163293 27926839 ~ 27993556 (+) True XLOC_012843
TCONS_00025638 mRNA downstream 239509 29402623 ~ 29405645 (+) False XLOC_012850
TCONS_00025639 mRNA downstream 239903 29403017 ~ 29413756 (+) True XLOC_012850
TCONS_00025640 mRNA downstream 735841 29898955 ~ 29906010 (+) True XLOC_012851
TCONS_00025641 mRNA downstream 787119 29950233 ~ 29955391 (+) True XLOC_012852
TCONS_00025642 mRNA downstream 865021 30028135 ~ 30030949 (+) False XLOC_012853
TCONS_00025628 other upstream 852532 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025621 other upstream 1420009 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025607 other upstream 1960523 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025594 other upstream 2408922 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025591 other upstream 2725664 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025637 other downstream 11979 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025648 other downstream 966685 30129799 ~ 30130552 (+) False XLOC_012854
TCONS_00025649 other downstream 966685 30129799 ~ 30131831 (+) True XLOC_012854
TCONS_00025666 other downstream 1835512 30998626 ~ 31006058 (+) False XLOC_012861
TCONS_00025679 other downstream 2682390 31845504 ~ 31846556 (+) True XLOC_012868

Expression Profile

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