RNA id: TCONS_00025656


Basic Information

Item Value
RNA id TCONS_00025656
length 709
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_012856
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 30507839 ~ 30510241 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCCTCGAGCGAGCGGCGGTCGGAGACGCTAGAATGTTGGCAACTACGGCATTTCGTCTTGTTGGTAAACGGGCCTTGTCCACCTCCATCTGCCTTCGTGGTGCACATGGAGTTGCGAAGGTCGAGGACTACTCACTCCCTGCATACTTTGACCGACGAGAGAGTCCTCTTCCGGAAATCAAGTTTGTGCAGCAGCTGAGTGCTGATCAAAAGTCTCTCAAGGAGAAAGAGAAGGGATCCTGGGCTGCACTGTCCAAAGAGGAAAAGATTGCATTATATCGTATCAGCTTCAAGGAAAGCTTTGCTGAAATGAATCAAGGATCAGGAGAGTGGAAATCTGTGGTTGCAGGAATCTTCTTCTTTGTCGGCTTGACTGGCTTAGTAGTTTTGTGGCAGAGGAAATACGtttatggAGATGTCCCCAATACTTTTGATCCTGAATACAAGCAGAAGGAGATCCAGAGGATGCTGGATATGAGAATCAACCCTGTTCAGGGATTTGCTGCCAAATGGGACTATGAAAACAACGCTTGGAAGAAATAAATGATGTAAAAATTGATCTGTTGGACcaggcacacacacaccctctaaccaataaaaagaaaagtctGCAATTATTGTTTGTCCACCTGTTACCTTCAAATGGTTTTGGAAGATGACTTCCTCTTAAGGTTATGtatcataaataaaatgtcaatatctctcaaa

Function

GO:

id name namespace
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen biological_process
GO:0001666 response to hypoxia biological_process
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5175 Predicted to enable cytochrome-c oxidase activity. Acts upstream of or within response to hypoxia. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex IV. Is expressed in several structures, including adaxial cell; brain; digestive system; eye; and muscle. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to several human genes including COX4I1 (cytochrome c oxidase subunit 4I1).

Ensembl:

ensembl_id ENSDART00000026866

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025646 lncRNA upstream 376008 30129771 ~ 30131831 (+) False XLOC_012854
TCONS_00025647 lncRNA upstream 376008 30129796 ~ 30131831 (+) False XLOC_012854
TCONS_00025634 lncRNA upstream 1333348 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA upstream 1344725 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025618 lncRNA upstream 2893136 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00026905 lncRNA downstream 563002 31073243 ~ 31074445 (+) False XLOC_012863
TCONS_00027120 lncRNA downstream 563002 31073243 ~ 31075016 (+) False XLOC_012863
TCONS_00026906 lncRNA downstream 563021 31073262 ~ 31075016 (+) False XLOC_012863
TCONS_00026907 lncRNA downstream 563744 31073985 ~ 31074789 (+) True XLOC_012863
TCONS_00026908 lncRNA downstream 641564 31151805 ~ 31152607 (+) False XLOC_012864
TCONS_00025650 mRNA upstream 27012 30157034 ~ 30480827 (+) False XLOC_012855
TCONS_00025653 mRNA upstream 27012 30370559 ~ 30480827 (+) False XLOC_012855
TCONS_00025651 mRNA upstream 29295 30157198 ~ 30478544 (+) False XLOC_012855
TCONS_00025652 mRNA upstream 29295 30370339 ~ 30478544 (+) False XLOC_012855
TCONS_00025654 mRNA upstream 29295 30421528 ~ 30478544 (+) False XLOC_012855
TCONS_00025658 mRNA downstream 989 30511230 ~ 30564688 (+) True XLOC_012857
TCONS_00025659 mRNA downstream 57704 30567945 ~ 30573849 (+) True XLOC_012858
TCONS_00025660 mRNA downstream 336996 30847237 ~ 30850365 (+) True XLOC_012859
TCONS_00025661 mRNA downstream 367955 30878196 ~ 30952282 (+) False XLOC_012860
TCONS_00025662 mRNA downstream 368050 30878291 ~ 30933706 (+) False XLOC_012860
TCONS_00025649 other upstream 376008 30129799 ~ 30131831 (+) True XLOC_012854
TCONS_00025648 other upstream 377287 30129799 ~ 30130552 (+) False XLOC_012854
TCONS_00025637 other upstream 1332631 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025628 other upstream 2203522 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025621 other upstream 2770999 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025666 other downstream 488385 30998626 ~ 31006058 (+) False XLOC_012861
TCONS_00025679 other downstream 1335263 31845504 ~ 31846556 (+) True XLOC_012868
TCONS_00025687 other downstream 1574698 32084939 ~ 32088944 (+) True XLOC_012873
TCONS_00025732 other downstream 2933023 33443264 ~ 33444257 (+) True XLOC_012909
TCONS_00025746 other downstream 3112676 33622917 ~ 33626850 (+) False XLOC_012918

Expression Profile

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